Table 2. Codon Usage


I scanned 313 sequences, containing 239 coding sequences

Amino acids usage:

Hydrophilic 49.8%
  Basic 13.4%
      Lys 6.4%  Arg  5.1%  his  1.9%
  Acidic 11.4%
      Asp  5.2%  Glu  6.2%
  Neutral 25.0%
      Asn  4.0%  Gln  3.5%  Cys  1.7%  Met  2.6%  Ser  7.7% Thr 5.5%

Hydrophoric 49.6%
  Aliphatic 41.4%
      Gly  7.8%  Ala  7.6%  Val 6.9%  Pro  4.8%  Leu  8.9%  Ile 5.6%
Aromatic  8.1%
  Phe  4.1%  Tyr  2.9%  Trp  1.2%


Codon usage,                       Total 81166 codons, 352 stops
133 ambiguous codons.              15 uncomplete codons

UCAG
U UUU Phe 42.3%
UUC Phe 57.6%

UUA Leu 10.2%
UUG Leu 23.0%

UCU Ser 26.6%
UCC Ser 14.7%

UCA Ser 18.1%
UCG Ser 9.5%

UAU Tyr 38.4%
UAC Tyr 61.5%

UAA *** 30.3%
UAG *** 18.7%

UGU Cys 53.9%
UGC Cys 46.0%

UGA *** 50.8%
UGG Trp100.0%

C CUU Leu 26.7%
CUC Leu 20.4%

CUA Leu 9.7%
CUG Leu 9.7%

CCU Pro 35.5%
CCC Pro 13.8%

CCA Pro 34.6%
CGC Pro 15.9%

CAU His 50.1%
CAC His 49.8%

CAA Gln 49.6%
CAG Gln 50.3%

CGU Arg 19.9%
CGC Arg 6.7%

CGA Arg 9.7%
CGG Arg 6.7%

A AUU Ile 41.1%
AUC Ile 42.7%

AUA Ile 16.1%
AUG Met100.0%

ACU Thr 34.6%
ACC Thr 26.0%

ACA Thr 26/6%
ACG Thr 12.6%

AAU Asn 40.2%
AAC Asn 59.7%

AAA Lys 38.7%
AAG Lys 61.2%

AGU Ser 15.5%
AGC Ser 15.3%

AGA Arg 31.7%
AGG Arg 24.9%

G GUU Val 39.6%
GUC Val 23.6%

GUA Val 10.2%
GUG Val 26.3%

GCU Ala 47.3%
GCC Ala 19.7%

GCA Ala 21.9%
GCG Ala 10.9%

GAU Asp 59.5%
GAC Asp 40.4%

GAA Glu 46.4%
GAG Glu 53.5%

GGU Gly 36.3%
GGC Gly 13.5%

GGA Gly 38.2%
GGG Gly 11.8%