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GENETIC AND BIOCHEMICAL INTERROGATION OF ROTAVIRUS-COHESIN INTERACTION

Investigators
Ding, Siyuan
Institutions
Stanford University
Start date
2018
End date
2019
Objective
Project Summary Rotaviruses (RVs) are the most common cause of severe gastroenteritis and dehydrating diarrhea in in-fants and young children worldwide. Despite the wide administration of several vaccines, RVs still remain ahighly significant human pathogen, leading to over 215,000 deaths annually. The inadequate understanding ofRV-host interaction greatly impedes the development of improved vaccines and therapeutic interventions. In the preliminary studies, Dr. Ding has performed an unbiased genome-wide CRISPR-Cas9 screenand a high-throughput RV-host proteomic interactome mapping, to bridge this gap in knowledge and identifiedstromal antigen 2 (STAG2) as a novel host factor required for RV infection. The infectivity of human and animalRVs was significantly reduced in STAG2-/- cells. STAG2 is an integral member of the nuclear cohesin complexand how it promotes cytoplasmic RV replication is perplexing and intriguing. In this application, using a set ofpowerful and tractable model systems, Dr. Ding will test the hypothesis that RV hijacks the STAG2/cohesincomplex to block DNA damage and inhibit IFN induction, thereby enhancing virus infection. During the K99phase, Dr. Ding will scrutinize the signaling pathways in STAG2-/- cells that mediate resistance to RV infection(Aim 1; K99). Dr. Ding will further generate a new mouse model that specifically lacks Stag2 in the intestinalepithelium (Aim 2; K99) and employ the novel human intestinal organoids (Aim 2; R00) to study how STAG2deficiency affects RV infection in a physiologically valid environment. Finally, Dr. Ding will follow up on his pro-vocative finding that several subunits of the cohesin complex physically bind to an RV non-structural protein.He will determine the outcome of such interaction for RV replication and pathogenesis in vivo, using a new re-verse genetics system (Aim 3; R00). Collectively, these studies on RV-cohesin interaction will constitute thescientific basis for the rational design of antiviral inhibitors (by transiently targeting STAG2) and vaccine candi-dates (RV mutants incapable of cohesin interaction), which will be further pursued in future R01 applications. Dr. Ding has developed a comprehensive career development plan, under the direct mentorship of Dr.Harry Greenberg at Stanford University, to perfect his training in experimental (human organoids) and profes-sional (lab management and grantsmanship) skills to achieve his short-term goals of successfully carrying outthe proposed project and establishing independence. A prestigious advisory committee (Drs. Ann Arvin, PeterJackson and Jan Carette at Stanford), in combination with a team of excellent external consultants and collab-orators, will provide essential guidance in genomic screens, proteomics, and mouse genetics, to complementDr. Ding's strong background in virology and immunology. The exemplary environment in the Department ofMicrobiology and Immunology at the Stanford School of Medicine, will enable Dr. Ding to fully benefit from thisAward and attain his long-term career goal to lead a world-class laboratory studying enteric viruses with a spe-cial focus on the viral pathogenesis and interaction with the host intestinal innate immune system.
Funding Source
Nat'l. Inst. of Allergy and Infectious Diseases
Project source
View this project
Project number
1K99AI135031-01A1
Accession number
135031
Categories
Bacterial Pathogens
Viruses and Prions