An official website of the United States government.

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 26 - 50 of 251

  1. Yersinia enterocolitica in wild and peridomestic rodents within Great Britain, a prevalence study

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Yersinia enterocolitica is a human pathogen transmitted via the faecal–oral route among animals and humans and is a major foodborne public health hazard. This study explores the role of Y. enterocolitica transmission at the livestock–wildlife interface and investigates the potential role wild and peridomestic rodents play as a source of this zoonotic pathogen.

      • Bacterial pathogens
      • Yersinia
  2. Observations on the distribution and control of Salmonella in commercial broiler hatcheries in Great Britain

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Salmonella can enter hatcheries via contaminated eggs and other breaches of biosecurity. The study examined the prevalence and distribution of Salmonella in commercial hatcheries and assessed the effects of providing advice on Salmonella control. Intensive swab sampling was performed throughout 23 broiler hatcheries in Great Britain (GB). Swabs were cultured using a modified ISO6579:2017 method.

      • Bacterial pathogens
      • Salmonella
  3. A national study through a ‘Farm‐to‐fork’ Approach to determine Salmonella dissemination along with the Lebanese poultry production chain

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. This cross-sectional study was conducted to determine the prevalence of Salmonella at different stages of the broiler production chain and layer flocks in addition to their antibiotic resistance profile and molecular patterns. Over a period of 3 years, different sample matrices were collected from Lebanese farms, slaughterhouses and retail markets.

      • Bacterial pathogens
      • Salmonella
  4. Epidemiological survey and risk factors associated with hepatitis E virus in small ruminants in southern Spain

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Autochthonous cases of hepatitis E (HE) associated with zoonotic genotypes HEV-3 and HEV-4 have significantly increased in industrialized countries over the last decade. Suidae are generally recognized as the main reservoirs of these genotypes. Susceptibility to HE virus (HEV) infection and zoonotic potential have also been confirmed in other species, including sheep and goat.

      • Viruses
      • Hepatitis
  5. Distribution and phylogenetics of hepatitis E virus genotype 4 in humans and animals

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Worldwide, hepatitis E virus (HEV) infection is considered a significant public health concern. In particular, HEV genotype 4 (HEV-4) has spread to more areas and host species. In this study, we describe the global distribution of HEV-4 and characterize HEV-4 subtypes by host, country and year of isolation. We retrospectively collected HEV-4 sequences available before December 31, 2019, in GenBank.

      • Viruses
      • Hepatitis
  6. Impact of farm‐level strategies against thermotolerant Campylobacter in broiler chickens, using a quantitative risk assessment model and meta‐analysis

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. The aim of this study was to evaluate the effect of control strategies (probiotic supplementation and vaccination) at farm on thermotolerant Campylobacter infection due to the consumption of salad cross-contaminated from broiler meat. The broiler food chain was modelled considering the most common practices applied in Argentina (baseline model) and their effect on the prevalence and counts of Campylobacter.

      • Bacterial pathogens
      • Campylobacter
  7. Cryptosporidium parvum outbreak associated with Raccoons at a Wildlife Facility—Virginia, May–June 2019

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Cryptosporidium parvum is a parasitic zoonotic pathogen responsible for diarrheal illness in humans and animals worldwide. We report an investigation of a cryptosporidiosis outbreak in raccoons and wildlife rehabilitation workers at a Virginia facility. Fifteen (31%) of 49 facility personnel experienced symptoms meeting the case definition, including four laboratory-confirmed cases.

      • Parasites
      • Cryptosporidium parvum
  8. Risk factors for hospitalization among adults aged ≥65 years with non‐typhoidal Salmonella infection linked to backyard poultry contact

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Objective We describe the epidemiology of live poultry-associated salmonellosis (LPAS) and investigate potential risk factors associated with hospitalization among adults aged ≥65 years in the United States during 2008–2017.

      • Bacterial pathogens
      • Salmonella
  9. Multistate outbreak of Salmonella Typhimurium linked to pet hedgehogs, United States, 2018–2019

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. In December 2018, PulseNet, the national laboratory network for enteric disease surveillance, identified an increase in Salmonella Typhimurium isolates with an uncommon pulsed-field gel electrophoresis pattern which was previously isolated from hedgehogs.

      • Bacterial pathogens
      • Salmonella
  10. Zoonotic transmission of hepatitis E virus in a pig farmer from Argentina: A case report

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView.

      • Viruses
      • Hepatitis
  11. Local‐scale diversity of Yersinia pestis: A case study from Ambohitromby, Ankazobe District, Madagascar

    • Zoonoses and Public Health
    • Zoonoses and Public Health, Volume 69, Issue 1, Page 61-70, February 2022.

      • Bacterial pathogens
      • Yersinia
  12. Examination of Australian backyard poultry for Salmonella, Campylobacter and Shigella spp., and related risk factors

    • Zoonoses and Public Health
    • Zoonoses and Public Health, Volume 69, Issue 1, Page 13-22, February 2022. Worldwide, foodborne illness is a significant public health issue in both developed and developing countries. Salmonellosis, campylobacteriosis and shigellosis are common foodborne gastrointestinal illnesses caused by the bacteria Salmonella spp., Campylobacter spp. and Shigella spp. respectively.

      • Bacterial pathogens
      • Campylobacter
      • Salmonella
      • Shigella
  13. Genomic diversity and resistome profiles of Salmonella enterica subsp. enterica serovar Kentucky isolated from food and animal sources in Ireland

    • Zoonoses and Public Health
    • Zoonoses and Public Health, Volume 69, Issue 1, Page 1-12, February 2022. Salmonella enterica subsp. enterica serovar Kentucky is frequently isolated from poultry, dairy and beef cattle, the environment and people with clinical salmonellosis globally. However, the sources of this serovar and its diversity and antimicrobial resistance capacities remain poorly described in many regions.

      • Bacterial pathogens
      • Salmonella
  14. Modelling the introduction and transmission of Campylobacter in a North American chicken flock

    • Zoonoses and Public Health
    • Zoonoses and Public Health, Volume 69, Issue 1, Page 23-32, February 2022.

      • Bacterial pathogens
      • Campylobacter
  15. Giardia duodenalis in colony stray cats from Italy

    • Zoonoses and Public Health
    • Zoonoses and Public Health, Volume 69, Issue 1, Page 46-54, February 2022.

      • Parasites
      • Giardia lamblia
  16. Zoonotic transmission of hepatitis E virus in a pig farmer from Argentina: A case report

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Hepatitis E virus (HEV) is a public health concern due to its zoonotic transmission to human, being pigs a highly recognized reservoir. We previously demonstrated HEV genotype 3 infections in pig herds from the highest commercial active region from Argentina. Here, we present a case of acute symptomatic hepatitis E in an elderly man with occupational exposure to pigs who referred regular consumption of pork and sausages.

      • Hepatitis
      • Viruses
  17. Genomic diversity and resistome profiles of Salmonella enterica subsp. enterica serovar Kentucky isolated from food and animal sources in Ireland

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Salmonella enterica subsp. enterica serovar Kentucky is frequently isolated from poultry, dairy and beef cattle, the environment and people with clinical salmonellosis globally. However, the sources of this serovar and its diversity and antimicrobial resistance capacities remain poorly described in many regions. To further understand the genetic diversity and antimicrobial sensitivity patterns among S.

      • Salmonella
      • Bacterial pathogens
  18. Examination of Australian backyard poultry for Salmonella, Campylobacter and Shigella spp., and related risk factors

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Abstract

      • Campylobacter
      • Salmonella
      • Shigella
      • Bacterial pathogens
  19. Analysis of environmental dust in goat and sheep farms to assess Coxiella burnetii infection in a Q fever endemic area: Geographical distribution, relationship with human cases and genotypes

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Real-time PCR analysis of environmental samples (dust and aerosols) is an easy tool to investigate the presence of Coxiella burnetii in the farm environment. The aim of this study was to assess the distribution of C. burnetii DNA in dust collected inside animal premises from 272 small ruminant farms in Bizkaia (northern Spain), a region with recent reports of human Q fever cases and outbreaks.

      • Bacterial pathogens
  20. A review of Cyclospora cayetanensis in animals

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Cyclosporiasis is a global, emerging disease in humans caused by Cyclospora cayetanensis. The role of animals in the epidemiology of cyclosporiasis is not fully understood. We conducted a narrative review of the published literature on C. cayetanensis in animals. MEDLINE® (Web of Science™), Agricola (ProQuest), CABI Global Health (1979 to December 2020) and Food Science and Technology Abstracts (EBSCOhost) (1979 to February 2020) were searched.

      • Cyclospora cayetanensis
      • Parasites
  21. Dissemination of IncFII plasmids carrying fosA3 and blaCTX‐M‐55 in clinical isolates of Salmonella enteritidis

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Multidrug-resistant Salmonella Enteritidis (S. Enteritidis) isolates have become a significant threat to public health, and fosfomycin has been proposed as one of the therapeutic antibiotics for serious infections by resistant pathogens. In this study, a total of 501 clinical S. Enteritidis isolates were screened and 14 (2.8%) isolates exhibited resistance to fosfomycin (MIC ≥ 1,024 μg/mL) as well as ceftriaxone (MIC ≥ 128 μg/mL).

      • Salmonella
      • Bacterial pathogens
  22. Campylobacter jejuni ST50, a pathogen of global importance: A comparative genomic analysis of isolates from Australia, Europe and North America

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Campylobacter is a leading cause of acute bacterial gastroenteritis in humans worldwide and are a major contributor to the global burden of foodborne disease (The World Health Organization, 2015).

      • Campylobacter
      • Bacterial pathogens
  23. Detection of spatial and spatio‐temporal Salmonella Heidelberg and Salmonella Typhimurium human case clusters focused around licensed abattoirs in Ontario in 2015, and their potential relation to known outbreaks

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Salmonellosis is one of several zoonotic diseases for which individuals with occupational animal contact, including abattoir workers, are at an increased risk. If meat is contaminated during slaughter, this can increase the risk of enteric illness for consumers.

      • Salmonella
      • Bacterial pathogens
  24. Characterization of the emerging multidrug‐resistant Salmonella enterica serotype Kentucky ST314 in China

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Salmonella enterica serotype Kentucky (S. Kentucky) is an important Salmonella serotype with multiple sequence types (ST) with a worldwide incidence. We identified 8 STs from 180 strains of S. Kentucky, and ST314 emerged as the most commonly encountered ST. Drug susceptibility testing revealed that ST314 had multiple resistance properties, and 75.5% of the strains were resistant to three or more classes of antimicrobials.

      • Salmonella
      • Bacterial pathogens
  25. Tracing Clostridium perfringens strains along the chicken production chain from farm to slaughter by multilocus sequence typing

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. The current study is undertaken to characterize the prevalence, genotypes distribution, antibiotic resistance and genetic diversity of Clostridium perfringens (C. perfringens) collected from different stages of a chicken production chain.

      • Clostridium perfringens
      • Bacterial pathogens