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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 51 - 75 of 1667

  1. Effect of dietary β‐glucan supplementation on growth performance, body composition, intestinal microbes, and capacity against pathogen of golden trevally (Gnathanodon speciosus, family Carangidae)

    • Journal of the World Aquaculture Society
    • Abstract The efficacy of dietary β‐glucan supplementation in golden trevally (Gnathanodon speciosus) was evaluated. The fish were fed five different diets supplemented with 0%, 0.05%, 0.10%, 0.20%, and 0.40% β‐glucan for 56 days. After 56 days of culture, survival was the highest when the fish were fed a 0.10% β‐glucan diet. Growth rates were higher in fish fed diets supplemented with all β‐glucan levels.

      • Bacterial pathogens
      • Vibrio
  2. Transcriptome analysis of the hepatopancreas from the Litopenaeus vannamei infected with different flagellum types of Vibrio alginolyticus strains

    • Frontiers in Cellular and Infection Microbiology
    • Vibrio alginolyticus, one of the prevalently harmful Vibrio species found in the ocean, causes significant economic damage in the shrimp farming industry. Its flagellum serves as a crucial virulence factor in the invasion of host organisms. However, the processes of bacteria flagella recognition and activation of the downstream immune system in shrimp remain unclear. To enhance comprehension of this, a ΔflhG strain was created by in-frame deletion of the flhG gene in V.

      • Bacterial pathogens
      • Vibrio
  3. Aeromonashydrophila infection in tilapia triggers changes in the microbiota composition of fish internal organs

    • FEMS Microbiology Ecology
    • Aeromonas hydrophila is a major pathogenic species that causes mass mortality in various freshwater fish species including hybrid tilapia, the main fish species in Israeli aquaculture. Our hypothesis was that A. hydrophila infection may cause changes in the microbiota composition of fish internal organs, and therefore we aimed to study the effect of A. hydrophila infection by injection or by net handling on the microbiota compositions of fish intestine, spleen, and liver.

      • Bacterial pathogens
      • Vibrio
  4. The assembly of gut microbiota implicates shrimp acute hepatopancreas necrosis disease progression

    • Applied Microbiology and Biotechnology
    • Ample evidence shows dysbiosis in the gut microbiota when comparing healthy shrimp with those affected by severe acute hepatopancreatic necrosis disease (AHPND). However, the static comparison used in available studies leads to the uncertainties regarding how and to what extent the gut microbiota responds to the progressive severity of AHPND.

      • Bacterial pathogens
      • Vibrio
  5. Draft genome sequence of Vibrio lentus VLO8, recovered from the larval culture of the Chilean scallop (Argopecten purpuratus)

    • Microbiology Resource Announcements
    • Microbiology Resource Announcements, Ahead of Print. This announcement reports the genome of Vibrio lentus VLO8 recovered from the larval culture of Chilean scallop. The genomes of strain VLO8 have two contigs with a total length of 5,499,980 bp, an average G + C content of 44.22%, a total number of protein-coding genes of 6,439, and 170 RNAs.

      • Bacterial pathogens
      • Vibrio
  6. The phase variation between wrinkly and smooth colony phenotype affects the virulence of Vibrio parahaemolyticus

    • Archives of Microbiology
    • Vibrio parahaemolyticus, the causative agent of seafood-associated gastroenteritis, undergoes wrinkly and smooth colony switching on the plate. The wrinkly spreader grew faster, had stronger motility and biofilm capacity when compared with the smooth one. However, whether the two phenotypes differ in their virulence still needs to be further investigated.

      • Bacterial pathogens
      • Vibrio
  7. 209 Prevalence of Antimicrobial Resistance Genes and Mobile Genetic Elements in the Swine Gut Microbiome

    • Journal of Animal Science
    • Antimicrobial resistance (AMR) is one of the most pressing threats to public health. It contributes to over a million deaths a year currently and by 2050 it is expected to cause more annual death than cancer. The swine industry has taken important steps to address the AMR crisis by phasing out the use of antimicrobial growth promoters.

      • Bacterial pathogens
      • Vibrio
  8. 322 Metabolic Pathway and Rumen Bacterial Taxa Associated with Divergent Residual Body Weight Gain Phenotypes in Beef Cattle

    • Journal of Animal Science
    • We applied metabolomics and 16S rRNA gene sequencing to determine the metabolic pathway and ruminal bacterial taxa associated with divergent residual body weight (BW) gain phenotype in crossbred beef steers. A group of 108 crossbred growing beef steers (average BW = 282.87 ± 30 kg) were fed a forage-based diet for a period of 56 d in a confinement dry lot equipped with GrowSafe intake nodes to determine their residual body weight gain (RADG) phenotype.

      • Bacterial pathogens
      • Vibrio
  9. PSXIII-20 The Effect of Hemp Varieties and Cannabidiol Concentrations on the in Vitro Ruminal Microbiome

    • Journal of Animal Science
    • This study aimed to evaluate the effect of hemp varieties and cannabidiol (CBD) concentrations on in vitro ruminal microbiota diversity and abundance relative do alfalfa (Medicago sativa). Two ruminally cannulated Angus steers were used as inoculum donors for in vitro incubation.

      • Bacterial pathogens
      • Vibrio
  10. Blueberry extract inhibits quorum-sensing regulators and controls Vibrio parahaemolyticus biofilms and virulence

    • LWT
    • Anti-biofilm and anti-virulence effects of blueberry extract (BE) at sub-inhibitory of concentrations (SICs) against Vibrio parahaemolyticus were investigated in this study. When three V. parahaemolyticus strains were exposed to BE at 6.25 mg/mL and 9.38 mg/mL, swarming and twitching motility were suppressed by 40.4%–57.1% and 20.8%–39.1%, respectively. Hydrophobicity and auto-aggregation were decreased by 63.2%–94.5% and 43.8%–88.4%, respectively.

      • Bacterial pathogens
      • Vibrio
  11. PSII-8 Comparison of Different Fattening Stages on Rumen Microbiota and Physiological Characteristics in Japanese Black Cattle

    • Journal of Animal Science
    • This study aimed to investigate the relationship between rumen microbiota and physiological characteristics in Japanese Black cattle during the fattening period, which are known for their distinctive physiological characteristics due to prominent intramuscular fat deposition. The experimental period was categorized into three stages: early (12 to 14 months of age; T1), middle (15 to 22 months; T2), and late fattening phases (23 to 30 months; T3).

      • Bacterial pathogens
      • Vibrio
  12. PSXIV-9 Effects of Dietary Restriction and One-Carbon Metabolite Supplementation During Early Gestation on the Maternal Gut and Vaginal Microbiota in Cattle

    • Journal of Animal Science
    • Maternal diet quality and quantity have significant impacts on both maternal and fetal health and development. The composition and function of the maternal gut microbiome is also significantly influenced by diet. However, little is known about the impact of gestational nutrient restriction on the maternal microbiome during early gestation, which is a critical stage for many developmental processes.

      • Bacterial pathogens
      • Vibrio
  13. A Single-Laboratory Performance Evaluation of MALDI-TOF MS in Rapid Identification of Staphylococcus aureus, Cronobacter sakazakii, Vibrio parahaemolyticus, and Some Closely Related Bacterial Species of Public Health Importance

    • Journal of AOAC INTERNATIONAL
    • Background Staphylococcus is a genus of Gram-positive bacteria, known to cause food poisoning and gastrointestinal illness in humans. Additionally, the emergence of methicillin-resistant S. aureus (MRSA) strains has caused a major health care burden worldwide. Cronobacter is a group of Gram-negative bacteria that can survive in extreme dry conditions. Cronobacter sakazakii is known to contaminate powdered infant formula and cause life-threatening infections in neonates.

      • Bacterial pathogens
      • Cronobacter
      • Staphylococcus aureus
      • Vibrio
  14. Marine actinomycete Streptomyces variabilis S26 as a biocontrol agent for vibriosis in shrimp larval rearing systems

    • Journal of Basic Microbiology
    • Abstract Indiscriminate use of antibiotics has led to the emergence of antibiotic‐resistant microbes and the loss of natural flora in aquaculture systems necessitating the ban of many of these chemotherapeutants in aquaculture. Actinobacteria play a profound role in the biogeochemical cycling in the marine environment and represent the principal source of secondary metabolites with antimicrobial property.

      • Bacterial pathogens
      • Vibrio
  15. Quick preculture method for determining low concentration Vibrio spp. in contaminated seafood and its verification

    • Food Control
    • This study aimed to present a new approach for detecting pathogenic Vibrio spp., including V. parahaemolyticusV. vulnificus, and V. cholerae in contaminated seafood. This method combined polymerase chain reaction (PCR) with a concise preculturing step and a simplified DNA extraction procedure. The effectiveness of the method was confirmed using contaminated mussel samples.

      • Bacterial pathogens
      • Vibrio
  16. 30 Microbiome Manipulation to Reduce Methane Emission in Beef Cattle

    • Journal of Animal Science
    • Among the major sources of methane production, ruminants account for a considerable fraction of the anthropogenic methane produced. Thus, minimizing methane emission in intensive and extensive cattle production systems while maintaining/increasing performance of animals will have a significant impact on the environment and will help develop a sustainable carbon-based market system.

      • Bacterial pathogens
      • Vibrio
  17. Gut bacterial consortium enriched in a biofloc system protects shrimp against Vibrio parahaemolyticus infection

    • Microbiome
    • Background Shrimp cultured in a biofloc system (BFS) have a lower disease incidence than those farmed in a water exchange system (WES). Although a number of studies have reported that the gut bacterial community induced by BFS is highly associated with shrimp disease resistance, the causal relationship remains unknown.

      • Bacterial pathogens
      • Vibrio
  18. Complete genome sequence of Vibrio parahaemolyticus strain PH1273, isolated from aquacultured shrimp in the Philippines

    • Microbiology Resource Announcements
    • Microbiology Resource Announcements, Ahead of Print. We announce the complete genome sequence of Vibrio parahaemolyticus strain PH1273. This strain was collected from a Penaeus vannamei pond in the Philippines in 2015. Genome analysis revealed that it lacks the gene pirAB responsible for causing acute hepatopancreatic necrosis disease but encode multiple secretion systems and the associated effectors.

      • Bacterial pathogens
      • Vibrio
  19. Holistic integration of omics data reveals the drivers that shape the ecology of microbial meat spoilage scenarios

    • Frontiers in Microbiology
    • Background The use of omics data for monitoring the microbial flow of fresh meat products along a production line and the development of spoilage prediction tools from these data is a promising but challenging task. In this context, we produced a large multivariate dataset (over 600 samples) obtained on the production lines of two similar types of fresh meat products (poultry and raw pork sausages).

      • Bacterial pathogens
      • Vibrio
  20. Effects of 2'‐Fucosyllactose on the composition and metabolic activity of intestinal microbiota from piglets after in vitro fermentation

    • Journal of the Science of Food and Agriculture
    • Abstract Background As indigestible carbohydrates, milk oligosaccharides exert various benefits for newborns mainly through intestinal microbiota, among which 2’‐fucosyllactose (2’‐FL) is the most predominant milk oligosaccharide. However, knowledge about the fermentative characteristics of 2’‐FL in the gut remains limited, especially in the small intestine.

      • Bacterial pathogens
      • Vibrio
  21. Transcriptome analysis of digestive diverticula of Hong Kong oyster (Crassostrea hongkongesis) infected with Vibrio harveyi

    • Fish & Shellfish Immunology
    • The Hong Kong oyster (Crassostrea hongkongesis), as the main marine aquaculture shellfish in the South China Sea, not only has high economic and ecological value, but also is an ideal model for conducting research on pathogen host interaction. However, diseases caused by Vibrio pose a serious impediment to the culture of Chongkongesis.

      • Bacterial pathogens
      • Vibrio
  22. Evidence that fish death after Vibrio vulnificus infection is due to an acute inflammatory response triggered by a toxin of the MARTX family

    • Fish & Shellfish Immunology
    • Vibrio vulnificus is an emerging zoonotic pathogen associated with fish farms that is capable of causing a hemorrhagic septicemia known as warm-water vibriosis. According to a recent transcriptomic and functional study, the death of fish due to vibriosis is more related to the inflammatory response of the host than to the tissue lesions caused by the pathogen. In this work, we hypothesize that the RtxA1 toxin (a V.

      • Bacterial pathogens
      • Vibrio
  23. Effects of β-1,3-glucan on growth, immune responses, and intestinal microflora of the river prawn (Macrobrachium nipponense) and its resistance against Vibrio parahaemolyticus

  24. Investigating the effect of bacterial coinfections on juvenile and adult green‐lipped mussels (Perna canaliculus)

    • Journal of the World Aquaculture Society
    • Abstract The New Zealand's Greenshell™ mussel (Perna canaliculus) aquaculture industry is being affected by summer mortality events associated with increasing seawater temperatures and pathogens. In this study, challenge experiments were conducted to investigate, for the first time, the effects of pathogen coinfection on the survivability and haemolymph immune responses of juvenile and adult mussels.

      • Bacterial pathogens
      • Vibrio
  25. Cooperation and cheating orchestrate Vibrio assemblages and polymicrobial synergy in oysters infected with OsHV-1 virus

    • Proceedings of the National Academy of Sciences
    • Polymicrobial infections threaten the health of humans and animals but remain understudied in natural systems. We recently described the Pacific Oyster Mortality Syndrome (POMS), a polymicrobial disease affecting oyster production worldwide. In the French Atlantic coast, the disease involves coinfection with ostreid herpesvirus 1 (OsHV-1) and virulent Vibrio.

      • Bacterial pathogens
      • Vibrio