An official website of the United States government.

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 4426 - 4450 of 18445

  1. Prevalence and Characterization of ESBL/AmpC Producing Escherichia coli from Fresh Meat in Portugal

    • Antibiotics
    • The present study aimed to characterize the extended-spectrum β-lactamases and plasmid-mediated AmpC β-lactamases (ESBL/PMAβ) among Escherichia coli producers isolated from beef, pork, and poultry meat collected at retail, in Portugal. A total of 638 meat samples were collected and inoculated on selective medium for the search of E. coli resistant to 3rd generation cephalosporins.

      • Bacterial pathogens
      • Produce Safety
  2. Cultivation and Genomic Characterization of the Bile Bacterial Species From Cholecystitis Patients

    • Frontiers in Microbiology
    • The microbes in human bile are closely related to gallbladder health and other potential disorders. Although the bile microbial community has been investigated by recent studies using amplicon or metagenomic sequencing technologies, the genomic information of the microbial species resident in bile is rarely reported.

      • Shigella
      • Vibrio
      • Bacterial pathogens
  3. Experimentally observed Campylobacter jejuni survival kinetics in chicken meat products during model gastric digestion tended to be lower than model predictions

    • Food Microbiology
    • Author(s): Kohei Takeoka, Hiroki Abe, Kento Koyama, Shigenobu Koseki

      • Campylobacter
      • Bacterial pathogens
  4. Optimization and Characterization of Plantago major Seed Gum/Nanoclay/Foeniculum vulgare Essential Oil Active Nanocomposite Films and Their Application in Preservation of Local Butter

    • Food and Bioprocess Technology
    • The aim of this study was to prepare Plantago major seed gum (PMSG)-based nanocomposite active films by the addition of fennel essential oil (FEO) as active agent and nanoclay as reinforcing additive. The effect of FEO (0–8%) and nanoclay (0–5%) on the properties of PMSG films was evaluated using the response surface methodology. Moisture absorption, water vapor permeability, and water contact angle of films decreased by increasing FEO content.

      • Staphylococcus aureus
      • Bacterial pathogens
  5. Genomic diversity and resistome profiles of Salmonella enterica subsp. enterica serovar Kentucky isolated from food and animal sources in Ireland

    • Zoonoses and Public Health
    • Zoonoses and Public Health, EarlyView. Salmonella enterica subsp. enterica serovar Kentucky is frequently isolated from poultry, dairy and beef cattle, the environment and people with clinical salmonellosis globally. However, the sources of this serovar and its diversity and antimicrobial resistance capacities remain poorly described in many regions. To further understand the genetic diversity and antimicrobial sensitivity patterns among S.

      • Salmonella
      • Bacterial pathogens
  6. Extensive growth and growth boundary model for non-proteolytic Clostridium botulinum – Evaluation and validation with MAP and smoked foods

    • Food Microbiology
    • Author(s): Ioulia Koukou, Tina Dahl Devitt, Paw Dalgaard

      • Clostridium botulinum
      • Bacterial pathogens
  7. Research Note: Hypervirulent arthritis-causing Salmonella Pullorum isolated from Chinese native chicken breeds significantly decreased growth performance of chicks

    • Poultry Science
    • Author(s): Peiyong Li, Mingyue Zhang, Guijuan Hao, Shuhong Sun Pullorum disease is characterized by white diarrhea resulting from infection by S. Pullorum, but arthritis associated with S. Pullorum infection has become increasingly frequent recently, especially in Chinese native chicken flocks. In this study, we isolated and identified 4 S. Pullorum strains from the Qingjiaoma chicken breeders with arthritis symptoms.

      • Bacterial pathogens
      • Salmonella
  8. The Staphylococcus aureus CC398 Lineage: An Evolution Driven by the Acquisition of Prophages and Other Mobile Genetic Elements

    • Genes
    • Among clinically relevant lineages of Staphylococcus aureus, the lineage or clonal complex 398 (CC398) is of particular interest. Strains from this lineage were only described as livestock colonizers until 2007. Progressively, cases of infection were reported in humans in contact with farm animals, and now, CC398 isolates are increasingly identified as the cause of severe infections even in patients without any contact with animals.

      • Staphylococcus aureus
      • Bacterial pathogens
  9. Carvacrol Essential Oil: A Natural Antibiotic against Zoonotic Multidrug-Resistant Staphylococcus Species Isolated from Diseased Livestock and Humans

    • Antibiotics
    • Staphylococcus species cause diseases in animals and humans. The prevalence and antimicrobial profiles of Staphylococcus spp. in animals and human samples in the Minya Governorate, Egypt, were determined, and resistance- and virulence-associated genes were observed in multidrug-resistant (MDR) isolates. Moreover, the antibacterial effect of carvacrol essential oil (EO) on the MDR isolates was studied.

      • Staphylococcus aureus
      • Bacterial pathogens
  10. Heterogeneity in single-cell outgrowth of Listeria monocytogenes in half Fraser enrichment broth is affected by strain variability and physiological state

    • Food Research International
    • Author(s): Jasper W. Bannenberg, Marcel H. Tempelaars, Marcel H. Zwietering, Tjakko Abee, Heidy M.W. den Besten

      • Bacterial pathogens
      • Listeria monocytogenes
  11. Enhanced antibacterial efficacy and mechanism of octyl gallate/beta-cyclodextrins against Pseudomonas fluorescens and Vibrio parahaemolyticus and incorporated electrospun nanofibers for Chinese giant salamander fillets preservation

    • International Journal of Food Microbiology
    • Author(s): Yu-gang Shi, Dong-hui Li, Yi-ming Kong, Run-run Zhang, Qing Gu, Meng-xin Hu, Shi-yi Tian, Wen-gang Jin

      • Bacterial pathogens
      • Vibrio
  12. Characterization of Clostridium perfringens bacteriophages and their application in chicken meat and milk

    • International Journal of Food Microbiology
    • Author(s): Tahir Noor Mohammadi, Cunkuan Shen, Yuncheng Li, Mahmoud Gamaleldin Zayda, Jun Sato, Yoshimitsu Masuda, Ken-ichi Honjoh, Takahisa Miyamoto

      • Bacterial pathogens
      • Clostridium perfringens
  13. Relationship between growth ability, virulence, and resistance to food-processing related stresses in non-typhoidal Salmonellae

    • International Journal of Food Microbiology
    • Author(s): Silvia Guillén, María Marcén, Ester Fau, Pilar Mañas, Guillermo Cebrián The ability of Salmonella to resist and adapt to harsh conditions is one of the major features that have made this microorganism such a relevant health hazard. However, the impact of these resistance responses on other aspects of Salmonella physiology, such as virulence and growth ability, is still not fully understood.

      • Bacterial pathogens
      • Salmonella
  14. Prevalence, antibiotic resistance, and enterotoxin production of Staphylococcus aureus isolated from retail raw beef, sheep, and lamb meat in Turkey

    • International Journal of Food Microbiology
    • Author(s): Pınar Şanlibaba

      • Staphylococcus aureus
      • Bacterial pathogens
  15. Antibiotic resistance and phylogenetic comparison of human, pet animals and raw milk Staphylococcus aureus isolates

    • Comparative Immunology, Microbiology and Infectious Diseases
    • Author(s): Sara Pahlavanzadeh, Rahem Khoshbakht, Hami Kaboosi, Elham Moazamian The present study was conducted to compare the S. aureus isolates from different sources in the basis of resistance phenotypic and genotypic features and phylogenetic differences. Total of 70 S.

      • Bacterial pathogens
      • Staphylococcus aureus
  16. Direct Detection of Foodborne Pathogens via a Proximal DNA Probe-Based CRISPR-Cas12 Assay

    • Journal of Agricultural and Food Chemistry
    • Foodborne pathogens can cause illnesses. Existing tools for detecting foodborne pathogens are typically time-consuming or require complex protocols. Here, we report an assay to directly analyze pathogenic genes based on CRISPR-Cas12. This new test, termed proximal DNA probe-based CRISPR-Cas12 (PPCas12), facilitates the detection of foodborne pathogens without amplification steps.

      • Salmonella
      • Bacterial pathogens
  17. Phylogenetic and antimicrobial drug resistance analysis of Vibrio cholerae O1 isolates from Ghana

    • Microbiology
    • We investigated the evolution, phylogeny and antimicrobial resistance of O1 isolates (VCO1) from Ghana.

      • Vibrio
      • Bacterial pathogens
  18. Antimicrobial Resistance and Molecular Epidemiological Characteristics of Methicillin-Resistant and Susceptible Staphylococcal Isolates from Oral Cavity of Dental Patients and Staff in Northern Japan

    • Antibiotics
    • The acquisition of drug resistance and virulence by staphylococcal species colonizing humans is a growing public health concern. The present study was conducted to investigate the prevalence, antimicrobial resistance and genetic characteristics of Staphylococcus isolates from the oral cavity and skin (hand) of systemically healthy subjects with dental disease and dental staff in northern Japan.

      • Staphylococcus aureus
      • Bacterial pathogens
  19. Genomic Features of Salmonella enterica Subspecies houtenae Serotype 45:g,z51:- Isolated from Multiple Abdominal Abscesses of an African Fat-Tailed Gecko, United States, 2020

    • Antibiotics
    • Salmonella enterica subsp. houtenae (S. houtenae) is a common subspecies in reptiles and has been implicated as a source of serious and life-threatening diseases in humans. Although occurrence and significance of S. houtenae infections have been extensively studied, the genetic features of S. houtenae have remained unknown due to a lack of available high-quality genome sequences. We obtained the complete genome sequence of S.

      • Salmonella
      • Bacterial pathogens
  20. Susceptibility of Commensal E. coli Isolated from Conventional, Antibiotic-Free, and Organic Meat Chickens on Farms and at Slaughter toward Antimicrobials with Public Health Relevance

    • Antibiotics
    • The spread of resistant bacteria from livestock to the food industry promoted an increase of alternative poultry production systems, such as organic and antibiotic-free ones, based on the lack of antimicrobial use, except in cases in which welfare is compromised.

      • Bacterial pathogens
  21. Integration of electron beam technology into fresh produce wash water line: Effect of inoculum suspension medium and water quality parameters on the radioresistance of Salmonella Typhimurium ATCC 13311

    • Journal of Food Safety
    • Journal of Food Safety, EarlyView. Electron beam technology may be integrated into the fresh produce wash water line, as an advanced oxidation process (AOP). However, prior to implementation, effectiveness of the technology must be assessed. Hydroxyl radical scavengers were used to quantify the role of yield of hydroxyl radicals in inactivation of the selected pathogen in aqueous solution.

      • Salmonella
      • Bacterial pathogens
  22. A Comprehensive Evaluation of GeneLEAD VIII DNA Platform Combined to Deeplex Myc-TB® Assay to Detect in 8 Days Drug Resistance to 13 Antituberculous Drugs and Transmission of Mycobacterium tuberculosis Complex Directly From Clinical Samples

    • Frontiers in Cellular and Infection Microbiology
    • The GeneLEAD VIII (Diagenode, Belgium) is a new, fully automated, sample-to-result precision instrument for the extraction of DNA and PCR detection of Mycobacterium tuberculosis complex (MTBC) directly from clinical samples. The Deeplex Myc-TB® assay (Genoscreen, France) is a diagnostic kit based on the deep sequencing of a 24-plexed amplicon mix allowing simultaneously the detection of resistance to 13 antituberculous (antiTB) drugs and the determination of spoligotype.

      • Bacterial pathogens
  23. Virulence-related O islands in enterohemorrhagic Escherichia coli O157:H7

    • Gut Microbes
    • Enterohemorrhagic Escherichia coli (EHEC) O157:H7 is a principally foodborne pathogen linked to serious diseases, including bloody diarrhea, hemorrhagic colitis, and hemolytic uremic syndrome. Comparative genomics analysis revealed that EHEC O157 contains 177 unique genomic islands, termed O islands, compared with the nonpathogenic E. coli K-12 laboratory strain.

      • Escherichia coli O157:H7
      • Bacterial pathogens
  24. Camel Milk Composition and Microbial Reduction with Different Pasteurization Methods

    • American Journal of Food Science and Technology
    • The objective of this study was to investigate the efficacy of different thermal pasteurization methods on (1) the survival of the total aerobic bacteria, E. coli O157: H7, in camel milk, and (2) the camel milk components such as the fatty acid profile, lipid peroxidation, protein fractions, and the composition of volatile compounds. Samples of camel milk (N=9) were pasteurized at 65°C/30 min (PAST-1), 72°C/5 min (PAST-2), and 80°C/15 min (PAST-3). The survival of E.

      • Bacterial pathogens
  25. MSI-1 combats drug-resistant S. aureus by affecting bacterial viability and inhibiting carotenoid pigment production

    • Microbiological Research
    • Author(s): Xinyue Ye, Ya Huang, Chenyu Zhou, Xiaoyun Liu, Wenxuan Zhao, Xiurong Zhao, Xiaolin Xie, Liping Wang, Zhaoshi Bai, Changlin Zhou, Lingman Ma

      • Staphylococcus aureus
      • Bacterial pathogens