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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 51 - 75 of 18445

  1. Inhibition of Listeria monocytogenes and Clostridium botulinum in Uncured Shredded Pork and Turkey Packaged under Reduced Oxygen Conditions

    • Journal of Food Protection
    • Cooked, uncured meat products packaged under reduced oxygen packaging conditions require the control of anaerobic and facultative anaerobic pathogens if they are held at temperatures greater than 3°C at retail or consumer level. The objective of this study was to determine the inhibition of Listeria monocytogenes and Clostridium botulinum in cooked, uncured shredded turkey and pork formulated with synthetic or clean label antimicrobials.

      • Bacterial pathogens
      • Clostridium botulinum
      • Listeria monocytogenes
  2. Characterizing the formation and cross-contamination potential of multi-species biofilms in poultry processing environments: S. Enteritidis, C. jejuni and C. perfringens

    • Food Control
    • This study investigated the cross-contamination dynamics of biofilms preformed on stainless steel (SS) coupons on chicken skin and chicken meat by modeling surface-to-food transfer by contact and surface-to-food transfer in fluids. Additionally, mono-, dual-, and multi-species biofilms were examined to understand the effects of environmental conditions on biofilm-forming abilities.

      • Bacterial pathogens
      • Clostridium perfringens
  3. Persistence of vaccine origin Salmonella Typhimurium through the poultry production continuum, and development of a rapid typing scheme for their differentiation from wild type field isolates

    • Poultry Science
    • Salmonella enterica serovar Typhimurium is one of the top Salmonella serovars annually linked to poultry production and corresponding human illnesses. Because of this, vaccination of commercial poultry against Salmonella Typhimurium has been a focal point in recent years. There are several commercially available Salmonella Typhimurium vaccines available for use in poultry production.

      • Bacterial pathogens
      • Salmonella
  4. Isolation and characterization of a relatively broad-spectrum phage against Escherichia coli

    • Archives of Microbiology
    • Multiple pathogenic types or serotypes restrict treatment for colibacillosis. In addition, rising antibiotic resistance has heightened public awareness to prevent and control pathogenic Escherichia coli. The bacteriophage is a viable technique to treat colibacillosis as an alternative to antibiotics.

      • Bacterial pathogens
      • Escherichia coli O157:H7
  5. Prevalence and transmission of extensively drug-resistant Salmonella enterica serovar Kentucky ST198 based on whole-genome sequence in an intensive laying hen farm in Jiangsu, China

    • Poultry Science
    • Salmonella, which is widely distributed in nature, is an important zoonotic pathogen affecting humans, livestock, and other animals. Salmonella infection not only hinders the development of livestock and poultry-related industries but also poses a great threat to human health.

      • Bacterial pathogens
      • Salmonella
  6. Novel Synergistic Probiotic Intervention: Transcriptomic and Metabolomic Analysis Reveals Ameliorative Effects on Immunity, Gut Barrier, and Metabolism of Mice during Salmonella typhimurium Infection

    • Genes
    • Salmonella typhimurium (S. typhimurium), a prevalent cause of foodborne infection, induces significant changes in the host transcriptome and metabolome. The lack of therapeutics with minimal or no side effects prompts the scientific community to explore alternative therapies. This study investigates the therapeutic potential of a probiotic mixture comprising Lactobacillus acidophilus (L. acidophilus 1.3251) and Lactobacillus plantarum (L. plantarum 9513) against S.

      • Bacterial pathogens
      • Salmonella
  7. Implementation of a national monitoring programme of Campylobacter in Irish broilers to measure progress of on‐farm and primary processing control measures

    • Zoonoses and Public Health
    • Abstract Background Campylobacter is the most common food‐borne pathogen in the European Union. In 2018, the crude incidence rate in Ireland was 63.6 per 100,000 population. Chicken is considered an important source of infection for humans. In 2015, the Campylobacter Stakeholders' Group (CSG) was established to reduce Campylobacter contamination levels in Irish broiler flocks.

      • Bacterial pathogens
      • Campylobacter
  8. Antimicrobial efficacy of a citric acid/hydrochloric acid blend, peroxyacetic acid, and sulfuric acid against Salmonella and background microbiota on chicken hearts and livers

    • Journal of Food Science
    • Abstract This study aimed at evaluating the efficacy of a blend of citric acid and hydrochloric acid (CP), peroxyacetic acid (PAA), and sulfuric acid (SA) against Salmonella and mesophilic aerobic plate counts (APC) on chicken hearts and livers. Samples were inoculated with a five‐serovar cocktail of Salmonella at ca.

      • Bacterial pathogens
      • Salmonella
  9. Comprehensive analysis of Salmonella in poultry meat and products in Türkiye: Prevalence, antibiotic susceptibility and genomic characterisation

    • International Journal of Food Science & Technology
    • The study investigated Salmonella prevalence and antibiotic resistance profiles in various raw chicken products, analysing 293. Among the samples, 38.22% contained Salmonella, with Salmonella Enteritidis and Typhimurium identified in 4.46% and 0.89% of isolates, respectively. Whole genome sequencing revealed distinct clones and antibiotic resistance patterns, underscoring the importance of ongoing Salmonella monitoring in Turkish poultry production for food safety and public health.

      • Bacterial pathogens
      • Salmonella
  10. Antibacterial and antibiofilm activity of halogenated phenylboronic acids against Vibrio parahaemolyticus and Vibrio harveyi

    • Frontiers in Cellular and Infection Microbiology
    • Vibrios are associated with live seafood because they are part of the indigenous marine microflora. In Asia, foodborne infections caused by Vibrio spp. are common. In recent years, V. parahaemolyticus has become the leading cause of all reported food poisoning outbreaks. Therefore, the halogenated acid and its 33 derivatives were investigated for their antibacterial efficacy against V. parahaemolyticus.

      • Bacterial pathogens
      • Vibrio
  11. The read-through transcription-mediated autoactivation circuit for virulence regulator expression drives robust type III secretion system 2 expression in Vibrio parahaemolyticus

    • PLOS Pathogens
    • by Dhira Saraswati Anggramukti, Eiji Ishii, Andre Pratama, Mohamad Al Kadi, Tetsuya Iida, Toshio Kodama, Shigeaki Matsuda Vibrio parahaemolyticus is the leading cause of seafood-borne gastroenteritis in humans worldwide. The major virulence factor responsible for the enteropathogenicity of this pathogen is type III secretion system 2 (T3SS2), which is encoded on the 80-kb V.

      • Bacterial pathogens
      • Vibrio
  12. Assessment of the efficacy of decontamination treatments against Salmonella enterica subsp. enterica serovar Thompson on strawberries at different storage conditions

    • Postharvest Biology and Technology
    • The risk of outbreaks associated with strawberries consumption has led to the evaluation of different antimicrobial strategies. The effect of disinfectants, i.e. chlorine (100 and 200 mg L−1), peracetic acid (40 and 80 mg L−1), lactic acid and hydrogen peroxide (2.5 and 5%), on strawberries contaminated with Salmonella enterica subsp. enterica serovar Thompson during 2 min and stored at different times at two temperatures (20 and 4 °C) was studied.

      • Bacterial pathogens
      • Salmonella
  13. Genomic insights from Lactiplantibacillus plantarum BRD3A isolated from Atingba, a traditional fermented rice-based beverage and analysis of its potential for probiotic and antimicrobial activity against Methicillin-resistant Staphylococcus aureus

    • Frontiers in Microbiology
    • Lactiplantibacillus plantarum BRD3A was isolated from Atingba, a traditional fermented rice-based beverage of Manipur. Its genomic sequence has 13 contigs and its genome size is 3,320,817 bp with a guanine–cytosine (GC) ratio of 44.6%. It comprises 3185 genes including 3112 coding sequences (CDSs), 73 RNAs (including 66 tRNAs and others), and one clustered regularly interspaced short palindromic repeat (CRISPR) array. A comparative and phylogenetic analysis with the Lp.

      • Bacterial pathogens
      • Staphylococcus aureus
  14. Peptidome Profiling of Bubalus bubalis Urine and Assessment of Its Antimicrobial Activity against Mastitis-Causing Pathogens

    • Antibiotics
    • Urinary proteins have been studied quite exhaustively in the past, however, the small sized peptides have remained neglected for a long time in dairy cattle. These peptides are the products of systemic protein turnover, which are excreted out of the body and hence can serve as an important biomarker for various pathophysiologies. These peptides in other species of bovine have been reported to possess several bioactive properties.

      • Bacterial pathogens
      • Staphylococcus aureus
  15. Effect of air blast freezing and frozen storage on inactivation of Vibrio vulnificus in Pacific oysters (Crassostrea gigas)

    • Food Control
    • Air-blast freezing followed by frozen storage at different temperatures was assessed for inactivation of Vibrio vulnificus in Pacific oysters (Crassostrea gigas). Pacific oysters were allowed to bioaccumulate a cocktail of six strains of V. vulnificus. They were then air-blast frozen at −55 °C followed by frozen storage at −8 °C, −13 °C, −18 °C, −23 °C and −28 °C. V.

      • Bacterial pathogens
      • Vibrio
  16. Comparative proteome analysis revealed potential biomarkers and the underlying immune mechanisms in Vibrio‐resistant hybrid grouper, Epinephelus fuscoguttatus ♀ × Epinephelus lanceolatus ♂

    • Journal of Fish Diseases
    • Abstract Vibrio alginolyticus is the causative agent of vibriosis, a common bacterial infection in grouper aquaculture that is associated with the development of haemorrhagic and non‐haemorrhagic ulcerations on the fish. In the present study, comparative proteome analysis was performed on serum samples from Vibrio‐resistant and Vibrio‐susceptible grouper. Samples were analysed using high‐throughput LC‐MS/MS and identified 2770 unique peptides that corresponded to 344 proteins.

      • Bacterial pathogens
      • Vibrio
  17. Diversity, distribution, and bioprospecting potentials of carotenogenic yeast from mangrove ecosystem

    • Archives of Microbiology
    • Microbial production of carotenoids has gained significant interest for its cost-effectiveness and sustainable nature. This study focuses on 47 red-pigmented yeasts isolated from sediments and plant parts of 13 species of mangrove trees. The relative abundance and distribution of these yeasts varied with plant species and plant parts. The highest number of red yeasts was associated with the mangrove plant Avicennia officinalis (32%).

      • Bacterial pathogens
      • Vibrio
  18. Improving the Composition and Bioactivity of Cocoa (Theobroma cacao L.) Bean Shell Extract by Choline Chloride-Lactic Acid Natural Deep Eutectic Solvent Extraction Assisted by Pulsed Electric Field Pre-Treatment

    • Plant Foods for Human Nutrition
    • An environmentally friendly method for the release of cocoa bean shell (CBS) extracts is proposed in this paper. This work aims to investigate the effect of pulsed electric field (PEF) pre-treatment on subsequent solid-liquid extraction (SLE) of metabolites with choline chloride-lactic acid natural deep eutectic solvent (NaDES) and bioactivity of cocoa bean shell (CBS) extract. Two different media for PEF application were evaluated: water and chlorine chloride-lactic acid.

      • Bacterial pathogens
      • Listeria monocytogenes
      • Salmonella
      • Staphylococcus aureus
  19. It takes two to attach - endo-1,3-β-d-glucanase as a potential receptor of mannose-independent, FimH-dependent Salmonella Typhimurium binding to spinach leaves

    • Food Microbiology
    • Currently, fresh, unprocessed food has become a relevant element of the chain of transmission of enteropathogenic infections. To survive on a plant surface and further spread the infections, pathogens like Salmonella have to attach stably to the leaf surface.

      • Bacterial pathogens
      • Salmonella
  20. Global and regional prevalence of Cronobacter sakazakii in powdered milk and flour

    • Scientific Reports
    • Cronobacter sakazakii (Cz) infections linked with powdered milk/flour (PMF) are on the increase in recent times. The current study aimed at assessing worldwide and regional prevalence of Cz in PMF. Cz-PMF-directed data were conscientiously mined in four mega-databases via topic-field driven PRISMA protocol without any restriction.

      • Bacterial pathogens
      • Cronobacter
  21. Peeling back the many layers of competitive exclusion

    • Frontiers in Microbiology
    • Baby chicks administered a fecal transplant from adult chickens are resistant to Salmonella colonization by competitive exclusion. A two-pronged approach was used to investigate the mechanism of this process. First, Salmonella response to an exclusive (Salmonella competitive exclusion product, Aviguard®) or permissive microbial community (chicken cecal contents from colonized birds containing 7.85 Log10Salmonella genomes/gram) was assessed ex vivo using a S.

      • Bacterial pathogens
      • Salmonella
  22. Development of a closed-tube, calcein-based loop-mediated isothermal amplification assay to detect Salmonella spp. in raw meat samples

    • Journal of Microbiological Methods
    • Foodborne pathogens compromise food safety and public health, and Salmonella spp. are among the major pathogenic bacteria that cause outbreaks worldwide. Proper surveillance through timely and cost-effective detection methods across the food animal production chain is crucial to prevent Salmonella outbreaks and agricultural losses. Traditional culture methods are labor- and resource-intensive, with lengthy turnaround times.

      • Bacterial pathogens
      • Salmonella
  23. Isolation, Identification, and Characterization of Bacillus cereus Group Bacteria Isolated from the Dairy Farm Environment and Raw Milk in Tunisia

    • Foodborne Pathogens and Disease
    • Members of the Bacillus cereus group are well-known opportunistic foodborne pathogens. In this study, the prevalence, hemolytic activity, antimicrobial resistance profile, virulence factor genes, genetic diversity by enterobacterial repetitive intergenic consensus (ERIC)-polymerase chain reaction (PCR) genotyping, and adhesion potential were investigated in isolates from a Tunisian dairy farm environment and raw milk.

      • Bacterial pathogens
      • Bacillus cereus
  24. Exploring associations between the teat apex metagenome and Staphylococcus aureus intramammary infections in primiparous cows under organic directives

    • Applied and Environmental Microbiology
    • Applied and Environmental Microbiology, Ahead of Print. The primary objective of this study was to identify associations between the prepartum teat apex microbiome and the presence of Staphylococcus aureus intramammary infections (IMI) in primiparous cows during the first 5 weeks after calving.

      • Bacterial pathogens
      • Staphylococcus aureus
  25. Uncommon Salmonella Infantis Variants with Incomplete Antigenic Formula in the Poultry Food Chain, Italy

    • Emerging Infectious Diseases
    • Uncommon Salmonella enterica serovar Infantis variants with phenotypically identical, incomplete antigenic formula but different molecular serotypes were isolated during 2014‒2022 in different regions of Italy. Most isolates formed rough colonies.

      • Bacterial pathogens
      • Salmonella