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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1 - 25 of 582

  1. Persistence comparison of two Shiga-toxin producing Escherichia coli (STEC) serovars during long-term storage and thermal inactivation in various wheat flours

    • PLOS ONE
    • by Ian S. Hines, Tom Jurkiw, Emily Nguyen, Martine Ferguson, Sultana Solaiman, Elizabeth Reed, Maria Hoffmann, Jie Zheng Foodborne outbreaks associated with Shiga toxin-producing Escherichia coli (STEC) contaminated wheat flour have been an increasing food safety concern in recent decades. However, there is little literature aimed at investigating the impact of different flour types on the persistence of STEC during storage and thermal inactivation.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
  2. Disposable impedance sensors based on novel hybrid MoS2 nanosheets and microparticles to detect Escherichia Coli DNA

    • PLOS ONE
    • by Tien Ngoc Phuc Nguyen, Son Hai Nguyen, Mai Thi Tran The rapid and accurate detection of pathogenic bacteria is essential for food safety and public health. Conventional detection techniques, such as nucleic acid sequence-based amplification and polymerase chain reaction, are time-consuming and require specialized equipment and trained personnel.

      • Bacterial pathogens
      • Vibrio
  3. Exploration adhesion properties of Liquorilactobacillus and Lentilactobacillus isolated from two different sources of tepache kefir grains

    • PLOS ONE
    • by Julián Fernando Oviedo-León, Maribel Cornejo-Mazón, Rosario Ortiz-Hernández, Nayeli Torres-Ramírez, Humberto Hernández-Sánchez, Diana C. Castro-Rodríguez Due to the distinctive characteristics of probiotics, it is essential to pinpoint strains originating from diverse sources that prove efficacious in addressing a range of pathologies linked to dysfunction of the intestinal barrier.

      • Bacterial pathogens
      • Staphylococcus aureus
  4. Effects of Bacillus subtilis as a single strain probiotic on growth, disease resistance and immune response of striped catfish (Pangasius hypophthalmus)

    • PLOS ONE
    • by Razia Liaqat, Shafaq Fatima, Wajeeha Komal, Qandeel Minahal, Zakia Kanwal, Muhammad Suleman, Chris G. Carter The present study investigated the potential role of Bacillus subtilis as probiotic in striped catfish (Pangasius hypophthalmus). Fish (initial weight = 150.00±2.63g n = 180) were stocked in circular tanks. Four isonitrogenous (30%) and isolipidic (3.29%) diets were formulated having supplementation of B.

      • Bacterial pathogens
      • Staphylococcus aureus
  5. Molecular docking and dynamics simulation studies uncover the host-pathogen protein-protein interactions in Penaeus vannamei and Vibrio parahaemolyticus

    • PLOS ONE
    • by Nur Fathiah Rosilan, Muhamad Arif Mohamad Jamali, Siti Aishah Sufira, Khor Waiho, Hanafiah Fazhan, Noraznawati Ismail, Yeong Yik Sung, Zeti-Azura Mohamed-Hussein, Azzmer Azzar Abdul Hamid, Nor Afiqah-Aleng Shrimp aquaculture contributes significantly to global economic growth, and the whiteleg shrimp, Penaeus vannamei, is a leading species in this industry. However, Vibrio parahaemolyticus infection poses a major challenge in ensuring the success of P.

      • Bacterial pathogens
      • Vibrio
  6. Rare serovars of non-typhoidal Salmonella enterica isolated from humans, beef cattle and abattoir environments in Nigeria

    • PLOS ONE
    • by Mabel Kamweli Aworh, Pernille Nilsson, Beverly Egyir, Felicia Amoa Owusu, Rene S. Hendriksen Introduction Salmonella is considered one of the most significant pathogens in public health since it is a bacterium that is frequently linked to food-borne illnesses in humans. Some Salmonella serovars are responsible for outbreaks that are connected to the consumption of animal products.

      • Bacterial pathogens
      • Salmonella
  7. Medium-term storage of calf beddings affects bacterial community and effectiveness to inactivate zoonotic bacteria

    • PLOS ONE
    • by Delphine Rapp, Colleen Ross, Vanessa Cave, Paul Maclean, Ruy Jauregui, Gale Brightwell Land-spreading of animal faecal wastes -such as animal beddings- can introduce zoonotic enteropathogens into the food system environment. The study evaluated the effectiveness of animal beddings naturally contaminated by calf manure to reduce E. coli O157:H7 or Salmonella enterica.

      • Bacterial pathogens
      • Salmonella
  8. Suppression of pathogens in properly refrigerated raw milk

    • PLOS ONE
    • by M. E. Coleman, T. P. Oscar, T. L. Negley, M. M. Stephenson Conflicting claims exist regarding pathogen growth in raw milk. A small pilot study was designed to provide definitive data on trends for pathogen growth and decline in raw bovine milk hygienically produced for direct human consumption. An independent laboratory conducted the study, monitoring growth and decline of pathogens inoculated into raw milk.

      • Bacterial pathogens
      • Campylobacter
      • Listeria monocytogenes
      • Salmonella
  9. The genomic and epidemiological virulence patterns of Salmonella enterica serovars in the United States

    • PLOS ONE
    • by Gavin J. Fenske, Jane G. Pouzou, Régis Pouillot, Daniel D. Taylor, Solenne Costard, Francisco J. Zagmutt The serovars of Salmonella enterica display dramatic differences in pathogenesis and host preferences. We developed a process (patent pending) for grouping Salmonella isolates and serovars by their public health risk. We collated a curated set of 12,337 S. enterica isolate genomes from human, beef, and bovine sources in the US.

      • Bacterial pathogens
      • Salmonella
  10. Dietary replacement of soybean meal with black soldier fly larvae meal in juvenile Labeo rohita and Catla catla: Effects on growth, nutritional quality, oxidative stress biomarkers and disease resistance

    • PLOS ONE
    • by Shafaq Fatima, Ayesha Afzal, Hamna Rashid, Saba Iqbal, Rosheen Zafar, Komal Khalid, Ayman Rauf, Maryam Majeed, Aqsa Malik, Chris G. Carter This experiment aimed to investigate the effects of partial substitution of crude protein from soybean meal (SBM) with black soldier fly (Hermetia illucens) larvae meal (BSFLM) in juvenile rohu (Labeo rohita) and catla (Catla catla).

      • Bacterial pathogens
      • Staphylococcus aureus
  11. In silico exploration of Serratia sp. BRL41 genome for detecting prodigiosin Biosynthetic Gene Cluster (BGC) and in vitro antimicrobial activity assessment of secreted prodigiosin

    • PLOS ONE
    • by Farhana Boby, Md. Nurul Huda Bhuiyan, Barun Kanti Saha, Subarna Sandhani Dey, Anik Kumar Saha, Md Jahidul Islam, Mahci Al Bashera, Shyama Prosad Moulick, Farhana Jahan, Md. Asad Uz Zaman, Sanjana Fatema Chowdhury, Showti Raheel Naser, Md. Salim Khan, Md. Murshed Hasan Sarkar The raising concern of drug resistance, having substantial impacts on public health, has instigated the search of new natural compounds with substantial medicinal activity.

      • Bacterial pathogens
      • Salmonella
      • Staphylococcus aureus
  12. A foodborne outbreak linked to Bacillus cereus at two middle schools in a rural area of Chongqing, China, 2021

    • PLOS ONE
    • by Tingting Li, Qinpei Zou, Cheng Chen, Qin Li, Shuquan Luo, Zhifeng Li, Chuan Yang, Di Yang, Zhi Huang, Huadong Zhang, Wenge Tang, Li Qi Bacillus cereus (B. cereus) is a common cause of foodborne illness. An outbreak of acute gastrointestinal illness occurred at two middle schools in a rural region of Chongqing, China, in 2021. This study aimed to elucidate the outbreak’s characteristics, identify risk factors, and determine the source of contamination.

      • Bacterial pathogens
      • Bacillus cereus
  13. An observational study of the presence and variability of the microbiota composition of goat herd milk related to mainstream and artisanal farm management

    • PLOS ONE
    • by Rita A. H. Hoving-Bolink, Adriaan F. G. Antonis, Marinus F. W. te Pas, Dirkjan Schokker Goat milk is produced on mainstream and artisanal farms. It was expected that the farm management may influence the microbial population of the milk. Therefore, we investigated the bacterial content and microbiota composition of raw milk in relation to Dutch goat farm management.

      • Bacterial pathogens
      • Staphylococcus aureus
  14. Comparative evaluation of antimicrobial activity of human granulysin, bovine and porcine NK-lysins against Shiga toxin-producing Escherichia coli O157:H7

    • PLOS ONE
    • by Erika N. Biernbaum, Rohana P. Dassanayake, Eric M. Nicholson, Indira T. Kudva Shiga toxin-producing Escherichia coli (STEC) O157:H7 (O157) is a foodborne pathogen causing human disease ranging from hemorrhagic colitis and hemolytic uremic syndrome to kidney failure, while remaining harmless to cattle, its primary reservoir.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
  15. Fast genome-based delimitation of Enterobacterales species

    • PLOS ONE
    • by Julie E. Hernández-Salmerón, Tanya Irani, Gabriel Moreno-Hagelsieb Average Nucleotide Identity (ANI) is becoming a standard measure for bacterial species delimitation. However, its calculation can take orders of magnitude longer than similarity estimates based on sampling of short nucleotides, compiled into so-called sketches. These estimates are widely used. However, their variable correlation with ANI has suggested that they might not be as accurate.

      • Bacterial pathogens
      • Shigella
  16. Identification, proteolytic activity quantification and biofilm-forming characterization of Gram-positive, proteolytic, psychrotrophic bacteria isolated from cold raw milk

    • PLOS ONE
    • by Mehdi Zarei, Sahar Elmi Anvari, Siavash Maktabi, Per Erik Joakim Saris, Amin Yousefvand Psychrotrophic bacteria of raw milk face the dairy industry with significant spoilage and technological problems due to their ability to produce heat-resistant enzymes and biofilms.

      • Bacterial pathogens
      • Staphylococcus aureus
  17. Assessing the mechanisms of multi-drug resistant non-typhoidal Salmonella (NTS) serovars isolated from layer chicken farms in Nigeria

    • PLOS ONE
    • by Idowu Oluwabunmi Fagbamila, Elena Ramon, Antonia A. Lettini, Maryam Muhammad, Alessandra Longo, Keti Antonello, Mabel K. Aworh, Jacob K. P. Kwaga, Paul A. Abdu, Jarleth U. Umoh, Junaidu A. Kabir, Antonia Ricci, Lisa Barco Background In Nigeria, there have been reports of widespread multiple antimicrobial resistance (AMR) amongst Salmonella isolated from poultry.

      • Bacterial pathogens
      • Salmonella
  18. Genetic diversity of Salmonella enterica isolated over 13 years from raw California almonds and from an almond orchard

    • PLOS ONE
    • by Anne-laure Moyne, Opeyemi U. Lawal, Jeff Gauthier, Irena Kukavica-Ibrulj, Marianne Potvin, Lawrence Goodridge, Roger C. Levesque, Linda J. Harris A comparative genomic analysis was conducted for 171 Salmonella isolates recovered from raw inshell almonds and raw almond kernels between 2001 and 2013 and for 30 Salmonella Enteritidis phage type (PT) 30 isolates recovered between 2001 and 2006 from a 2001 salmonellosis outbreak-associated almond orchard.

      • Bacterial pathogens
      • Salmonella
  19. Antimicrobial resistance- and pathogen patterns in the fecal microbiota of sows and their offspring in German commercial pig farms

    • PLOS ONE
    • by Anja Lührmann, Andrea Palmini, Justinus Hellmich, Vitaly Belik, Jürgen Zentek, Wilfried Vahjen Reducing antibiotic use is one of the biggest challenges in pig farming, as antibiotics have been used for years to control typical problems such as newborn or post-weaning diarrhea.

      • Bacterial pathogens
      • Clostridium perfringens
      • Salmonella
      • Shigella
  20. Fibrinolytic and antibiotic treatment of prosthetic vascular graft infections in a novel rat model

    • PLOS ONE
    • by Mikkel Illemann Johansen, Søren Jensen Rahbek, Søren Jensen-Fangel, Gabriel Antonio S. Minero, Louise Kruse Jensen, Ole Halfdan Larsen, Lise Tornvig Erikstrup, Anders Marthinsen Seefeldt, Lars Østergaard, Rikke Louise Meyer, Nis Pedersen Jørgensen

      • Bacterial pathogens
      • Staphylococcus aureus
  21. Seroprevalence of non-typhoidal Salmonella disease and associated factors in children in Mukuru settlement in Nairobi County, Kenya

    • PLOS ONE
    • by Schola K. Peter, Joshua M. Mutiso, Mercy Ngetich, Cecilia Mbae, Samuel Kariuki Non-typhoidal Salmonella (NTS) infections remain a significant public health challenge especially in sub-Saharan Africa. NTS disease is endemic in Kenya and is associated with sporadic fatal outbreaks in several regions of the country with poor resource setting.

      • Bacterial pathogens
      • Salmonella
  22. In vitro and in silico studies for the identification of anti-cancer and antibacterial peptides from camel milk protein hydrolysates

    • PLOS ONE
    • by Mohammad Javad Taghipour, Hamid Ezzatpanah, Mohammad Ghahderijani Today, breast cancer and infectious diseases are very worrying that led to a widespread effort by researchers to discover natural remedies with no side effects to fight them. In the present study, we isolated camel milk protein fractions, casein and whey proteins, and hydrolyzed them using pepsin, trypsin, and both enzymes.

      • Bacterial pathogens
      • Staphylococcus aureus
  23. Multidrug-resistant and extended-spectrum beta-lactamase-producing Enterobacteriaceae isolated from chicken droppings in poultry farms at Gondar City, Northwest Ethiopia

    • PLOS ONE
    • by Mitkie Tigabie, Sirak Biset, Teshome Belachew, Azanaw Amare, Feleke Moges Background The poultry sector is one of the largest and fastest-growing agricultural sub-sector, especially in developing countries like Ethiopia. In poultry production, poultry farmers use sub-optimum doses of antibiotics for growth promotion and disease prevention purpose.

      • Bacterial pathogens
      • Salmonella
  24. Roles of qseC mutation in bacterial resistance against anti-lipopolysaccharide factor isoform 3 (ALFPm3)

    • PLOS ONE
    • by Iyacoob Khunsri, Pinidphon Prombutara, Htut Htut Htoo, Supitcha Wanvimonsuk, Thanadon Samernate, Chindanai Pornsing, Sirinit Tharntada, Phattarunda Jaree, Vorrapon Chaikeeratisak, Kunlaya Somboonwiwat, Poochit Nonejuie Propelled by global climate changes, the shrimp industry has been facing tremendous losses in production due to various disease outbreaks, particularly early mortality syndrome (EMS), a disease caused by Vibrio parahaemolyticus AHPND.

      • Bacterial pathogens
      • Vibrio
  25. Characterization of the anti-pathogenic, genomic and phenotypic properties of a Lacticaseibacillus rhamnosus VHProbi M14 isolate

    • PLOS ONE
    • by Jingyan Zhang, Kailing Li, Xinping Bu, Shumin Cheng, Zhi Duan A strain of lactic acid bacteria from cheese was isolated, that showed strong growth inhibitory effects on Streptococcus mutans. The API 50CH system and 16S rDNA sequencing verified that this was a novel strain, and was named Lacticaseibacillus rhamnosus VHProbi M14. The strain inhibited the growth of S.

      • Bacterial pathogens
      • Staphylococcus aureus