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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1 - 25 of 27

  1. Structures, biosynthesis, and bioactivities of prodiginine natural products

    • Applied Microbiology and Biotechnology
    • Prodiginines are a large family of microbial secondary metabolites with a core structure of tripyrrole rings. They exhibit not only diverse chemical structures but also rich biological activities, such as anti-cancer, anti-microbial, anti-algae, anti-parasitic, pesticides, and UV radiation resistance.

      • Bacterial pathogens
      • Vibrio
      • Chemical contaminants
      • Heavy Metals
  2. Cadmium and copper mixture effects on immunological response and susceptibility to Vibrio harveyi in white shrimp Litopenaeus vannamei

    • Fish & Shellfish Immunology
    • Cadmium (Cd2+) and copper (Cu2+) are considered immunotoxic metals and their presence in combination in the aquatic environment may cause effects on shrimp species as Litopenaeus vannamei. Thus, this research evaluates the combined effects of Cd2+ and Cu2+ on shrimp inoculated with Vibrio harveyi bacteria. The experiments were performed at 96-hours of exposure to sublethal concentrations of both metals.

      • Bacterial pathogens
      • Vibrio
      • Chemical contaminants
      • Heavy Metals
  3. Water regime is important to determine cadmium toxicity on rice growth and rhizospheric nitrifier communities in contaminated paddy soils

    • Plant and Soil
    • Purpose It is unknown how the Cd-mediated changes in the rhizospheric nitrifier community affect plant growth under different water management practices.

      • Bacterial pathogens
      • Vibrio
      • Chemical contaminants
      • Heavy Metals
  4. Metagenomic landscape of taxonomy, metabolic potential and resistome of Sardinella longiceps gut microbiome

    • Archives of Microbiology
    • Fish gut microbiota, encompassing a colossal reserve of microbes represents a dynamic ecosystem, influenced by a myriad of environmental and host factors. The current study presents a comprehensive insight into Sardinella longiceps gut microbiome using whole metagenome shotgun sequencing. Taxonomic profiling identified the predominance of phylum Proteobacteria, comprising of Photobacterium, Vibrio and Shewanella sp.

      • Vibrio
      • Heavy Metals
      • Bacterial pathogens
      • Chemical contaminants
  5. Taxonomy and Functional Diversity in the Fecal Microbiome of Beef Cattle Reared in Brazilian Traditional and Semi-Intensive Production Systems

    • Frontiers in Microbiology
    • The importance of beef production for economy of Brazil and the growing demand for animal protein across the globe warrant an improvement in the beef production system. Although most attention has been on modulation of the rumen microbiome to improve ruminant production, the role of the lower gut microbiome in host health and nutrition remains relatively unexplored.

      • Heavy Metals
      • Bacterial pathogens
      • Chemical contaminants
      • Vibrio
  6. Targeting PirAvp and PirBvp Toxins of Vibrio parahaemolyticus with Oilseed Peptides: An In Silico Approach

    • Antibiotics
    • Acute hepatopancreatic necrosis disease (AHPND), caused by PirAvp- and PirBvp-releasing Vibrio parahaemolyticus strains, has resulted in massive mortality in shrimp aquaculture. Excessive use of antibiotics for AHPND management has led to antibiotic resistance, highlighting the urgency to search for alternatives. Using an in silico approach, we aimed to discover PirAvp/PirBvp-binding peptides from oilseed meals as alternatives to antibiotics.

      • Vibrio
      • Antibiotic residues
      • Bacterial pathogens
      • Chemical contaminants
  7. Pharmacophore-based screening and modification of amiloride analogs for targeting the NhaP-type cation-proton antiporter in Vibrio cholerae

    • Canadian Journal of Microbiology
    • The genome of Vibrio cholerae contains three structural genes for the NhaP-type cation-proton antiporter paralogues, Vc-NhaP1, Vc-NhaP2, and Vc-NhaP3, mediating exchange of K+ and or Na+ for protons across the membrane.

      • Vibrio
      • Antibiotic residues
      • Bacterial pathogens
      • Chemical contaminants
  8. Taxonomic and Functional Distribution of Bacterial Communities in Domestic and Hospital Wastewater System: Implications for Public and Environmental Health

    • Antibiotics
    • The discharge of untreated hospital and domestic wastewater into receiving water bodies is still a prevalent practice in developing countries.

      • Vibrio
      • Antibiotic residues
      • Bacterial pathogens
      • Chemical contaminants
  9. Bioaugmentation of Native Fungi, an Efficient Strategy for the Bioremediation of an Aged Industrially Polluted Soil With Heavy Hydrocarbons

    • Frontiers in Microbiology
    • The concurrence of structurally complex petroleum-associated contaminants at relatively high concentrations, with diverse climatic conditions and textural soil characteristics, hinders conventional bioremediation processes. Recalcitrant compounds such as high molecular weight polycyclic aromatic hydrocarbons (HMW-PAHs) and heavy alkanes commonly remain after standard soil bioremediation at concentrations above regulatory limits.

      • Vibrio
      • Bacterial pathogens
      • Chemical contaminants
  10. Highly Contaminated Marine Sediments Can Host Rare Bacterial Taxa Potentially Useful for Bioremediation

    • Frontiers in Microbiology
    • Coastal areas impacted by high anthropogenic pressures typically display sediment contamination by polycyclic aromatic hydrocarbons (PAHs) and heavy metals (HMs). Microbial-based bioremediation represents a promising strategy for sediment reclamation, yet it frequently fails due to poor knowledge of the diversity and dynamics of the autochthonous microbial assemblages and to the inhibition of the target microbes in the contaminated matrix.

      • Vibrio
      • Bacterial pathogens
      • Chemical contaminants
  11. The marine bivalve molluscs pathogen Vibrio neptunius produces the siderophore amphibactin which is widespread in molluscs microbiota

    • Environmental Microbiology
    • Amphiphilic siderophores including amphibactins are the most abundant siderophores in oceans. Genes putatively encoding the amphibactin system were proposed in some bacteria and homologues of these genes are particulary abundant in multiple bacterial lineages inhabitant of low‐iron seawater. However, since no defective mutant strains in any of these genes were studied to date, their role in amphibactin synthesis or uptake were not demonstrated.

      • Vibrio
      • Heavy Metals
      • Bacterial pathogens
      • Chemical contaminants
  12. Relationship Between Hg Speciation and Hg Methylation/Demethylation Processes in the Sulfate-Reducing Bacterium Pseudodesulfovibrio hydrargyri: Evidences From HERFD-XANES and Nano-XRF

    • Frontiers in Microbiology
    • Microorganisms are key players in the transformation of mercury into neurotoxic methylmercury (MeHg). Nevertheless, this mechanism and the opposite MeHg demethylation remain poorly understood.

      • Chemical contaminants
      • Vibrio
      • Bacterial pathogens
  13. High-Fat Diet Affects Heavy Metal Accumulation and Toxicity to Mice Liver and Kidney Probably via Gut Microbiota

    • Frontiers in Microbiology
    • Previous studies proved that heavy metals could increase the risk of disease by acting on the gut microbiota. Meanwhile, gut microbiota played important roles in detoxifying heavy metals. However, the response of gut microbiota to heavy metals and which microbes dominated this detoxification processes are still unclear.

      • Chemical contaminants
      • Vibrio
      • Heavy Metals
      • Bacterial pathogens
  14. Proteolytic activity of Vibrio harveyi YeaZ is related with resuscitation on the viable but non‐culturable state

    • Letters in Applied Microbiology
    • Significance and Impact of the Study: Vibrio harveyi is a major pathogen of marine animals. The bacterium could enter into a viable but non‐culturable state (VBNC) state when exposed to harsh conditions, and retains its pathogenicity after resuscitation. In this work, we analysed the enzyme activities of a resuscitation‐promoting factor YeaZ and the relationship of protease activities with its promoting effect on the resuscitation of VBNC cells.

      • Vibrio
      • Antibiotic residues
      • Bacterial pathogens
      • Chemical contaminants
  15. Synergistic Effects of a Chalkophore, Methanobactin, on Microbial Methylation of Mercury

    • Applied and Environmental Microbiology
    • Microbial production of the neurotoxin methylmercury (MeHg) is a significant health and environmental concern, as it can bioaccumulate and biomagnify in the food web. A chalkophore or a copper-binding compound, termed methanobactin (MB), has been shown to form strong complexes with mercury [as Hg(II)] and also enables some methanotrophs to degrade MeHg. It is unknown, however, if Hg(II) binding with MB can also impede Hg(II) methylation by other microbes.

      • Bacterial pathogens
      • Chemical contaminants
      • Vibrio
  16. A Novel Arsenate-Resistant Determinant Associated with ICEpMERPH, a Member of the SXT/R391 Group of Mobile Genetic Elements

    • Genes
    • ICEpMERPH, the first integrative conjugative element (ICE) of the SXT/R391 familyisolated in the United Kingdom and Europe, was analyzed to determine the nature of its adaptivefunctions, its genetic structure, and its homology to related elements normally found in pathogenicVibrio or Proteus species. Whole genome sequencing of Escherichia coli (E. coli) isolate K802 (whichcontains the ICEpMERPH) was carried out using Illumina sequencing technology.

      • Vibrio
      • Heavy Metals
      • Bacterial pathogens
      • Chemical contaminants
  17. Genome insights of mercury methylation among Desulfovibrio and Pseudodesulfovibrio strains

    • Research in Microbiology
    • Author(s): Marisol Goni-Urriza, Christophe Klopp, Magali Ranchou-Peyruse, Anthony Ranchou-Peyruse, Mathilde Monperrus, Bahia Khalfaoui-Hassani, Rémy Guyoneaud

      • Bacterial pathogens
      • Chemical contaminants
      • Vibrio
  18. Isoorientin attenuates benzo[a]pyrene-induced colonic injury and gut microbiota disorders in mice

    • Food Research International
    • Author(s): Shenyuan He, Xueyi Li, Cuiqin Li, Hong Deng, Yuyu Shao, Li Yuan

      • Bacterial pathogens
      • Vibrio
      • Vibrio
      • Bacterial pathogens
      • Chemical contaminants
      • Chemical contaminants
  19. Antimicrobial residues, non-typhoidal Salmonella, Vibrio spp. and associated microbiological hazards in retail shrimps purchased in Ho Chi Minh City (Vietnam)

    • Food Control
    • Available online 10 July 2019

      Author(s): Nguyen Thi Phuong Yen, Nguyen Thi Nhung, Nguyen Thi Bich Van, Nguyen Van Cuong, Le Tran Tien Chau, Huynh Ngoc Trinh, Chu Van Tuat, Nguyen Dong Tu, Nguyen Phu Huong Lan, James Campbell, Guy Thwaites, Stephen Baker, Juan Carrique-Mas

      • Salmonella
      • Vibrio
      • Antibiotic residues
      • Bacterial pathogens
      • Chemical contaminants
  20. Kinetics of Enzymatic Mercury Methylation at Nanomolar Concentrations Catalyzed by HgcAB [Environmental Microbiology]

    • Applied and Environmental Microbiology
    • Methylmercury (MeHg) is a potent bioaccumulative neurotoxin that is produced by certain anaerobic bacteria and archaea. Mercury (Hg) methylation has been linked to the gene pair hgcAB, which encodes a membrane-associated corrinoid protein and a ferredoxin. Although microbial Hg methylation has been characterized in vivo, the cellular biochemistry and the specific roles of the gene products HgcA and HgcB in Hg methylation are not well understood.

      • Vibrio
      • Bacterial pathogens
      • Chemical contaminants
  21. Surveillance and Genomics of Toxigenic Vibrio cholerae O1 From Fish, Phytoplankton and Water in Lake Victoria, Tanzania

    • Frontiers in Microbiology
      • Bacterial pathogens
      • Vibrio
      • Chemical contaminants
      • Antibiotic residues
      • Pesticide residues
  22. Structural and Proteomic Changes in Viable but Non-culturable Vibrio cholerae

    • Frontiers in Microbiology
    • Aquatic environments are reservoirs of the human pathogen Vibrio cholerae O1, which causes the acute diarrheal disease cholera. Upon low temperature or limited nutrient availability, the cells enter a viable but non-culturable (VBNC) state. Characteristic of this state are an altered morphology, low metabolic activity, and lack of growth under standard laboratory conditions. Here, for the first time, the cellular ultrastructure of V.

      • Campylobacter
      • Shigella
      • Vibrio
      • Antibiotic residues
      • Bacterial pathogens
      • Chemical contaminants
  23. O-Antigen Gene Clusters of Plesiomonas shigelloides Serogroups and Its Application in Development of a Molecular Serotyping Scheme

    • Frontiers in Microbiology
    • Plesiomonas shigelloides is a Gram-negative, flagellated, rod-shaped, ubiquitous, and facultative anaerobic bacterium. It has been isolated from various sources, such as freshwater, surface water, and many wild and domestic animals. P. shigelloides is associated with diarrheal diseases of acute secretory gastroenteritis, an invasive shigellosis-like disease, and a cholera-like illness in humans. At present, 102 somatic antigens and 51 flagellar antigens of P.

      • Antibiotic residues
      • Yersinia
      • Shigella
      • Vibrio
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
      • Chemical contaminants
  24. Response of microbial communities to pesticide residues in soil restored with Azolla imbricata

    • Applied Microbiology and Biotechnology
    • Abstract

      • Vibrio
      • Pesticide residues
      • Bacterial pathogens
      • Chemical contaminants
  25. NqrM (DUF539) Protein is Required for Maturation of Bacterial Na+-translocating NADH:quinone Oxidoreductase

    • Journal of Bacteriology
    • Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) catalyzes electron transfer from NADH to ubiquinone in the bacterial respiratory chain, coupled with Na+ translocation across the membrane. Na+-NQR maturation involves covalent attachment of FMN residues, catalyzed by flavin transferase encoded by the nqr-associated apbE gene.

      • Yersinia
      • Vibrio
      • Antibiotic residues
      • Bacterial pathogens
      • Chemical contaminants