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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1 - 25 of 39

  1. Microbiological quality, antibiotic resistant bacteria and relevant resistance genes in ready-to-eat Pacific oysters (Magallana gigas)

    • FEMS Microbiology Letters
    • Oysters are a highly valued seafood but can endanger public health, if they are eaten raw or barely cooked. We evaluated the microbiological quality of Pacific oysters (Magallana gigas) by international standard methods in four groups (each with four to five animals) acquired from supermarkets and directly from a farm producer. Most of the groups presented satisfactory microbiological quality.

      • Bacterial pathogens
      • Salmonella
      • Shigella
      • Staphylococcus aureus
      • Vibrio
  2. Antibiotic resistance profiles on pathogenic bacteria in the Brazilian environments

    • Archives of Microbiology
    • The present study aimed to elaborate a review of multidrug-resistant (MDR) bacteria in soil, food, aquatic environments, cattle, poultry, and swine farms in Brazil. Initially, the literature database for published papers from 2012 to 2023 was Scientific Electronic Library Online (SciELO), U.S. National Library of Medicine (PubMed), and Google Scholar, through the descriptors: antimicrobial resistance, resistance profile, multidrug resistance, environmental bacteria, and pathogenic bacteria.

      • Bacterial pathogens
      • Listeria monocytogenes
      • Salmonella
      • Shigella
      • Staphylococcus aureus
      • Vibrio
  3. Estimating the burden of foodborne gastroenteritis due to nontyphoidal Salmonella enterica, Shigella and Vibrio parahaemolyticus in China

    • PLOS ONE
    • by Yan-Jun Li, Yun-Fan Yang, Yi-Jing Zhou, Rong-Hua Zhang, Cheng-Wei Liu, Hong Liu, Xiu-Gui Li, Wen Chen, Yan Chen, Yong-Ning Wu To estimate the incidence of foodborne gastroenteritis caused by nontyphoidal Salmonella enterica, Shigella, and Vibrio parahaemolyticus in China, population surveys and sentinel hospital surveillance were implemented in six provinces from July 2010 to July 2011, and a multiplier calculation model for the burden of disease was constru

      • Bacterial pathogens
      • Salmonella
      • Shigella
      • Vibrio
  4. Metagenomic insights to understand the role of polluted river Yamuna in shaping the gut microbial communities of two invasive fish species

    • Archives of Microbiology
    • The gastrointestinal microbial community plays a crucial role in host health, immunity, protection, development and provides nutrients to the host. The rising human-induced pollution and heavy metal contamination in all aquatic systems globally has led us to explore the gut microbial diversity of two exotic invasive fish Cyprinus carpio (Linnaeus, 1858) and Oreochromis niloticus (Linnaeus,1857) from river Yamuna, India.

      • Bacterial pathogens
      • Shigella
      • Vibrio
  5. Diversity and predicted functional roles of cultivable bacteria in vermicompost: bioprospecting for potential inoculum

    • Archives of Microbiology
    • Vermicompost (VC) harbours diverse microbes, including plant growth-promoting microorganisms (PGPM) that are beneficial for sustainable crop production. Hence, this study aimed to analyse bacterial diversity of VC samples as a first high-throughput screening step towards subsequent targeted isolation of potential bacterial inoculum candidates.

      • Bacterial pathogens
      • Shigella
      • Vibrio
  6. Cultivation and Genomic Characterization of the Bile Bacterial Species From Cholecystitis Patients

    • Frontiers in Microbiology
    • The microbes in human bile are closely related to gallbladder health and other potential disorders. Although the bile microbial community has been investigated by recent studies using amplicon or metagenomic sequencing technologies, the genomic information of the microbial species resident in bile is rarely reported.

      • Shigella
      • Vibrio
      • Bacterial pathogens
  7. Novel amylomacins from seaweed-associated Bacillus amyloliquefaciens as prospective antimicrobial leads attenuating resistant bacteria

    • World Journal of Microbiology and Biotechnology
    • Abstract The rise in antibiotic-resistant bacterial strains prompting nosocomial infections drives the search for new bioactive substances of promising antibacterial properties. The surfaces of seaweeds are rich in heterotrophic bacteria with prospective antimicrobial substances. This study aimed to isolate antibacterial leads from a seaweed-associated bacterium.

      • Bacterial pathogens
      • Shigella
      • Staphylococcus aureus
      • Vibrio
  8. The Effects of Chinese Medicine QRD, Antibiotics, and Probiotics on Therapy and Gut Microbiota in Septic Rats

    • Frontiers in Cellular and Infection Microbiology
    • Sepsis is a common and often treacherous medical emergency with a high mortality and long-term complications in survivors. Though antibiotic therapy can reduce death rate of sepsis significantly, it impairs gut microbiota (GM), which play imperative roles in human health.

      • Shigella
      • Vibrio
      • Bacterial pathogens
  9. Oxidized Milk Induces Spatial Learning and Memory Impairment by Altering Gut Microbiota in Offspring Mice during Pregnancy and Lactation

    • Journal of Agricultural and Food Chemistry
    • Early adverse diet exposures are known to be associated with increased risk of learning and memory injury in offspring, yet whether oxidized milk is involved in such an effect has been largely unknown. Here, we focused on oxidized milk intake in mice during pregnancy and lactation to measure the changes in the learning and memory ability in offspring and also probed into the relevant association with gut microbiota.

      • Shigella
      • Vibrio
      • Bacterial pathogens
  10. VscF in T3SS1 Helps to Translocate VPA0226 in Vibrio parahaemolyticus

    • Frontiers in Cellular and Infection Microbiology
    • In Vibrio parahaemolyticus, type III secretion system 1 (T3SS1) is a major virulence factor that delivers effectors into the host eukaryotic cytoplasm; however, studies on its infection mechanism are currently limited. To determine the function of the vscF gene, we constructed the vscF deletion mutant ΔvscF and complementation strain CΔvscF.

      • Shigella
      • Vibrio
      • Bacterial pathogens
  11. Characteristics of soil bacterial and fungal communities on interval seawater covering Linchang Island, China

    • Archives of Microbiology
    • Characterization of microbial communities is important for understanding the soil biodiversity distribution affected by environmental factors. Here, we combined high-throughput sequencing of 16S rDNA and ITS to investigate the composition of bacterial and fungal communities in interval seawater covering Linchang Island, China. We compared the microbial communities in the soil of three sample points from the southern part to the northern part.

      • Shigella
      • Vibrio
      • Bacterial pathogens
  12. Alteration of Gut Microbiota After Antibiotic Exposure in Finishing Swine

    • Frontiers in Microbiology
    • Subclinical doses of antimicrobials are commonly used in the swine industry to control infectious diseases and growth performance. Accumulating evidence suggests that swine administered with antibiotics are susceptible to disease development due to disruption of the beneficial gut microbial community, which is associated with host immune regulation, nutrient digestion, and colonization resistance against pathogens.

      • Shigella
      • Vibrio
      • Bacterial pathogens
  13. Dietary Methionine Restriction Ameliorated Fat Accumulation, Systemic Inflammation, and Increased Energy Metabolism by Altering Gut Microbiota in Middle-Aged Mice Administered Different Fat Diets

    • Journal of Agricultural and Food Chemistry
    • Diet greatly influences gut microbiota. Dietary methionine restriction (MR) prevents and ameliorates age-related or high-fat-induced diseases and prolongs life span. This study aimed to reveal the impact of MR on gut microbiota in middle-aged mice with low-, medium-, high-fat diets. C57BL/6J mice were randomly divided into six groups with different MR and fat-content diets. Multiple indicators of intestinal function, fat accumulation, energy consumption, and inflammation were measured.

      • Vibrio
      • Bacterial pathogens
      • Shigella
  14. Detecting Foodborne Disease Outbreaks in Florida Through Consumer Complaints

    • Journal of Food Protection
    • The Florida Complaint and Outbreak Reporting System (FL-CORS) database is used by the Florida Department of Health’s Food and Waterborne Disease Program (FWDP) as one of the tools to detect foodborne disease outbreaks. We present a descriptive and spatial network analysis of the FL-CORS data collected during 2015-2018.

      • Clostridium perfringens
      • Norovirus
      • Salmonella
      • Shigella
      • Vibrio
      • Cryptosporidium parvum
      • Bacterial pathogens
      • Parasites
      • Viruses
  15. Effect of Alfalfa Hay and Starter Feeding Intervention on Gastrointestinal Microbial Community, Growth and Immune Performance of Yak Calves

    • Frontiers in Microbiology
    • The present study aims to evaluate the effects of different early weaning paradigms, which supplied with extra alfalfa hay, or starter feeding, or both alfalfa hay and starter feeding, along with the milk replacer, on the gastrointestinal microbial community, growth, and immune performance of yak calves. Twenty 30-day-old male yak calves were randomly assigned to four groups, including the control (CON), alfalfa hay (A), starter feeding (S), and starter plus alfalfa hay (SA) groups.

      • Shigella
      • Vibrio
      • Bacterial pathogens
  16. A multiplex PCR assay with a common primer for the detection of eleven foodborne pathogens

    • Journal of Food Science
    • Salmonella enterica, Listeria monocytogenes, Shigella flexneri, Escherichia coli O157:H7, Vibrio parahaemolyticus, Staphylococcus aureus, Vibrio cholerae, Clostridium botulinum type A, Bacillus cereus, Clostridium perfringens Alpha toxin, and Yersinia enterocolitica are 11 common foodborne pathogens. Traditional bacterial culture methods for detecting pathogens are time‐consuming and labor‐intensive.

      • Clostridium perfringens
      • Escherichia coli O157:H7
      • Listeria monocytogenes
      • Salmonella
      • Yersinia
      • Shigella
      • Vibrio
      • Staphylococcus aureus
      • Clostridium botulinum
      • Bacterial pathogens
      • Bacillus cereus
  17. Oxidized Pork Induces Oxidative Stress and Inflammation by Altering Gut Microbiota in Mice

    • Molecular Nutrition & Food Research
    • Reduced digestibility of foods containing oxidized proteins and the subsequent excessive accumulation of undigested components in the colon may cause changes in the intestinal flora composition. This study evaluates the characteristics of this change and the potential adverse effects on organisms. Methods and results Pork was cooked using sous‐vide or at high temperature and pressure (HTP), and freeze‐dried, resulting in different levels of oxidized damage.

      • Bacterial pathogens
      • Shigella
      • Vibrio
  18. Profiling of Protein Degraders in Cultures of Human Gut Microbiota

    • Frontiers in Microbiology
    • Unabsorbed proteins reach the colon and are fermented by the microbiota, yielding a variety of harmful metabolites. In the present study, a 16S rRNA gene survey identified the bacterial taxa flourishing in 11 batch fermentations with proteins and peptones as the sole fermentable substrates, inoculated with the feces of six healthy adults. Organic acids, ammonia, and indole resulting from protein breakdown and fermentation accumulated in all of the cultures.

      • Bacterial pathogens
      • Shigella
      • Vibrio
  19. Performance of Stool-testing Recommendations for Acute Gastroenteritis When Used to Identify Children With 9 Potential Bacterial Enteropathogens

    • Clinical Infectious Diseases
    • Background The ability to identify bacterial pathogens that necessitate specific clinical management or public health action in children with acute gastroenteritis is crucial to patient care and public health. However, existing stool-testing guidelines offer inconsistent recommendations, and their performance characteristics are unknown.

      • Vibrio
      • Campylobacter
      • Bacterial pathogens
      • Salmonella
      • Shigella
  20. Gut Microbiota and Colonization Resistance against Bacterial Enteric Infection

    • Microbiology and Molecular Biology Reviews
    • The gut microbiome is critical in providing resistance against colonization by exogenous microorganisms. The mechanisms via which the gut microbiota provide colonization resistance (CR) have not been fully elucidated, but they include secretion of antimicrobial products, nutrient competition, support of gut barrier integrity, and bacteriophage deployment.

      • Campylobacter
      • Vibrio
      • Bacterial pathogens
      • Yersinia
      • Salmonella
      • Listeria monocytogenes
      • Shigella
  21. Structural and Proteomic Changes in Viable but Non-culturable Vibrio cholerae

    • Frontiers in Microbiology
    • Aquatic environments are reservoirs of the human pathogen Vibrio cholerae O1, which causes the acute diarrheal disease cholera. Upon low temperature or limited nutrient availability, the cells enter a viable but non-culturable (VBNC) state. Characteristic of this state are an altered morphology, low metabolic activity, and lack of growth under standard laboratory conditions. Here, for the first time, the cellular ultrastructure of V.

      • Campylobacter
      • Shigella
      • Vibrio
      • Antibiotic residues
      • Bacterial pathogens
      • Chemical contaminants
  22. O-Antigen Gene Clusters of Plesiomonas shigelloides Serogroups and Its Application in Development of a Molecular Serotyping Scheme

    • Frontiers in Microbiology
    • Plesiomonas shigelloides is a Gram-negative, flagellated, rod-shaped, ubiquitous, and facultative anaerobic bacterium. It has been isolated from various sources, such as freshwater, surface water, and many wild and domestic animals. P. shigelloides is associated with diarrheal diseases of acute secretory gastroenteritis, an invasive shigellosis-like disease, and a cholera-like illness in humans. At present, 102 somatic antigens and 51 flagellar antigens of P.

      • Antibiotic residues
      • Yersinia
      • Shigella
      • Vibrio
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
      • Chemical contaminants
  23. Amelioration of Growth Performance, Lipid Accumulation and Intestinal Health in Mice by a Cooked Mixture of Lean Meat and Resistant Starch

    • Molecular Nutrition & Food Research
    • Abstract

      Scope

      : The intake of resistant starch (RS) may attenuate the risks of chronic illness, including colorectal cancer. However, whether the attenuated functionality of RS is maintained in cooked meat products needs to be clarified.

      • Shigella
      • Vibrio
      • Bacterial pathogens
  24. An Outbreak of Gastroenteritis Associated with GII.17 Norovirus -Contaminated Secondary Water Supply System in Wuhan, China, 2017

    • Food and Environmental Virology
    • Abstract

      • Vibrio
      • Bacterial pathogens
      • Viruses
      • Bacillus cereus
      • Norovirus
      • Shigella
  25. Regulatory Hierarchies Controlling Virulence Gene Expression in Shigella flexneri and Vibrio cholerae

    • Frontiers in Microbiology
    • Matthew J. Dorman, Charles J. Dorman

      • Shigella
      • Vibrio
      • Bacterial pathogens