An official website of the United States government.

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1 - 25 of 75

  1. Genomic insights into antimicrobial potential and optimization of fermentation conditions of pig-derived Bacillus subtilis BS21

    • Frontiers in Microbiology
    • Bacillus spp. have been widely used as probiotic supplements in animal feed as alternatives to antibiotics. In the present study, we screened a Bacillus subtilis strain named BS21 from pig feces. Antimicrobial activities, whole genome mining and UHPLC-MS/MS analysis were used to explore its antimicrobial mechanism.

      • Bacterial pathogens
      • Salmonella
      • Shigella
      • Staphylococcus aureus
  2. Probiotic Potentials and Antibiotic Susceptibility of a Yoghurt Analogue From a Mixture of 3-Plants Water Extracts.

    • American Journal of Food Science and Technology
    • Yoghurt is one of the best sources of probiotics and its importance to the human gastrointestinal system provides a perfect food matrix for transporting probiotics to the body. Unfortunately, animal milk dominates the typical commercial yoghurt; hence, the need to produce probiotic yoghurt from plant milk. This paper has outlined a new yoghurt analogue, made from a mixture of plant-based materials and analyzed their probiotic potentials, microbial assay and Antibiotic susceptibility.

      • Bacterial pathogens
      • Shigella
      • Staphylococcus aureus
  3. The correlation of the intestinal with pharyngeal microbiota in early neonates

    • Frontiers in Microbiology
    • Introduction The gut-lung axis has long been recognized as an important mechanism affecting intestinal and lung immunity.

      • Bacterial pathogens
      • Shigella
      • Staphylococcus aureus
  4. Microbiological quality, antibiotic resistant bacteria and relevant resistance genes in ready-to-eat Pacific oysters (Magallana gigas)

    • FEMS Microbiology Letters
    • Oysters are a highly valued seafood but can endanger public health, if they are eaten raw or barely cooked. We evaluated the microbiological quality of Pacific oysters (Magallana gigas) by international standard methods in four groups (each with four to five animals) acquired from supermarkets and directly from a farm producer. Most of the groups presented satisfactory microbiological quality.

      • Bacterial pathogens
      • Salmonella
      • Shigella
      • Staphylococcus aureus
      • Vibrio
  5. Genomic and in-vitro characteristics of a novel strain Lacticaseibacillus chiayiensis AACE3 isolated from fermented blueberry

    • Frontiers in Microbiology
    • Numerous different species of LAB are used in different fields due to their unique characteristics. However, Lacticaseibacillus chiayiensis, a newly established species in 2018, has limited microorganism resources, and lacks comprehensive evaluations of its properties. In this study, L. chiayiensis AACE3, isolated from fermented blueberry, was evaluated by genomic analysis and in vitro assays of the properties.

      • Bacterial pathogens
      • Salmonella
      • Shigella
      • Staphylococcus aureus
  6. Antibiotic resistance profiles on pathogenic bacteria in the Brazilian environments

    • Archives of Microbiology
    • The present study aimed to elaborate a review of multidrug-resistant (MDR) bacteria in soil, food, aquatic environments, cattle, poultry, and swine farms in Brazil. Initially, the literature database for published papers from 2012 to 2023 was Scientific Electronic Library Online (SciELO), U.S. National Library of Medicine (PubMed), and Google Scholar, through the descriptors: antimicrobial resistance, resistance profile, multidrug resistance, environmental bacteria, and pathogenic bacteria.

      • Bacterial pathogens
      • Listeria monocytogenes
      • Salmonella
      • Shigella
      • Staphylococcus aureus
      • Vibrio
  7. Carotenoid from marine Bacillus infantis: production, extraction, partial characterization, and its biological activity

    • Archives of Microbiology
    • Marine bacteria could serve as a potential source of natural carotenoids. Bacillus infantis, (Accession number OP601610), a bacterium with the ability to synthesize carotenoids, was isolated from the marine environment and used in this investigation to produce an orange pigment. Additionally, the production, extraction, partial characterization, and biological activity of orange pigment are reported in the current work.

      • Bacterial pathogens
      • Salmonella
      • Shigella
      • Staphylococcus aureus
  8. Pathogenic Microorganisms Linked to Fresh Fruits and Juices Purchased at Low-Cost Markets in Ecuador, Potential Carriers of Antibiotic Resistance

    • Antibiotics
    • The pathogenic microorganisms linked to fresh fruits and juices sold out in retail low-cost markets raise safety concerns as they may carry multidrug-resistant (MDR) genes.

      • Bacterial pathogens
      • Salmonella
      • Shigella
      • Staphylococcus aureus
  9. Bacteriological Quality of Table Eggs in Moroccan Formal and Informal Sector

    • International Journal of Food Science
    • Eggs constitute an important part of the Moroccan diet. However, contaminated eggs can cause a serious public health problem if consumed undercooked, uncooked, or used in unpasteurized egg foodstuffs. This study was carried out to evaluate the microbial contents of eggs according to their sales sector in Morocco.

      • Bacterial pathogens
      • Cronobacter
      • Salmonella
      • Shigella
      • Staphylococcus aureus
  10. Distinguishing the milk microbiota of healthy goats and goats diagnosed with subclinical mastitis, clinical mastitis, and gangrenous mastitis

    • Frontiers in Microbiology
    • Mastitis, mainly caused by bacterial intramammary infections, is the main problem in the breeding of dairy animals. The inflammations of the mammary gland is separated by types of mastitis, being subclinical, clinical, and the most severe, gangrenous mastitis. Here, we used 16S rRNA amplicon sequencing to characterize the bacterial microbiota of goat milk in the different types of goat mastitis caused by bacteria.

      • Bacterial pathogens
      • Shigella
      • Staphylococcus aureus
  11. Bacteriophage Tail Proteins as a Tool for Bacterial Pathogen Recognition—A Literature Review

    • Antibiotics
    • In recent years, a number of bacterial detection methods have been developed to replace time-consuming culture methods. One interesting approach is to mobilize the ability of phage tail proteins to recognize and bind to bacterial hosts. In this paper, the authors provide an overview of the current methodologies in which phage proteins play major roles in detecting pathogenic bacteria.

      • Bacterial pathogens
      • Campylobacter
      • Listeria monocytogenes
      • Salmonella
      • Shigella
      • Staphylococcus aureus
      • Yersinia
  12. Preservative effects of a novel bacteriocin from Lactobacillus panis C-M2 combined with dielectric barrier discharged cold plasma (DBD-CP) on acquatic foods

    • Food Science and Technology International
    • In this study, a novel bacteriocin Lactocin C-M2 produced by Lactobacillus panis C-M2, combined with dielectric barrier discharged cold plasma (DBD-CP), was used to evaluate the antibacterial effect on aquatic foods.

      • Bacterial pathogens
      • Shigella
      • Staphylococcus aureus
  13. Synbiotic microencapsulation of Enterococcus faecium Rp1: a potential probiotic isolated from ragi porridge with antiproliferative property against colon carcinoma cell line

    • Journal of Food Science and Technology
    • Ragi porridge, commonly consumed in South India is made from finger millet and noiyee (broken rice), and it is one of the excellent sources for probiotic bacteria. In vitro assays provided the proof that the probiotic strains isolated from ragi porridge can survive during the intestinal passage.

      • Bacterial pathogens
      • Salmonella
      • Shigella
      • Staphylococcus aureus
  14. Two Faces of Fermented Foods—The Benefits and Threats of Its Consumption

    • Frontiers in Microbiology
    • In underdeveloped and developing countries, due to poverty, fermentation is one of the most widely used preservation methods. It not only allows extending the shelf life of food, but also brings other benefits, including inhibiting the growth of pathogenic microorganisms, improving the organoleptic properties and product digestibility, and can be a valuable source of functional microorganisms.

      • Bacterial pathogens
      • Bacillus cereus
      • Listeria monocytogenes
      • Salmonella
      • Shigella
      • Staphylococcus aureus
  15. Bacteriophage Lytic Enzyme P9ly as an Alternative Antibacterial Agent Against Antibiotic-Resistant Shigella dysenteriae and Staphylococcus aureus

    • Frontiers in Microbiology
    • Developing new strategies to replace or supplement antibiotics to combat bacterial infection is a pressing task in the field of microbiological research. In this study, we report a lytic enzyme named P9ly deriving from the bacteriophage PSD9 that could infect multidrug-resistant Shigella. This enzyme was identified through whole-genome sequencing of PSD9. The results show that P9ly contains a conserved T4-like_lys domain and belongs to the phage lysozyme family.

      • Bacterial pathogens
      • Shigella
      • Staphylococcus aureus
  16. Novel amylomacins from seaweed-associated Bacillus amyloliquefaciens as prospective antimicrobial leads attenuating resistant bacteria

    • World Journal of Microbiology and Biotechnology
    • Abstract The rise in antibiotic-resistant bacterial strains prompting nosocomial infections drives the search for new bioactive substances of promising antibacterial properties. The surfaces of seaweeds are rich in heterotrophic bacteria with prospective antimicrobial substances. This study aimed to isolate antibacterial leads from a seaweed-associated bacterium.

      • Bacterial pathogens
      • Shigella
      • Staphylococcus aureus
      • Vibrio
  17. Effect of the Histone Methyltransferase Specific Probe BRD4770 on Metabolic Profiling of the Endophytic Fungus Diaporthe longicolla

    • Frontiers in Microbiology
    • The endophytic fungus Diaporthe longicolla was isolated from the stem of Saraca asoca (Roxb.) Willd., commonly known as Ashok plant in India and Sri Lanka. Since no reports are available regarding epigenetic modulations by BRD4770 in microbial entities, D.

      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  18. Effects of 3% Boric Acid Solution on Cutaneous Candida albicans Infection and Microecological Flora Mice

    • Frontiers in Microbiology
    • To determine the effect of 3% boric acid solution on cutaneous infections with Candida albicans (CA) in mice and its effect on skin microflora. Female mice were divided into three groups, with 18 mice in each group. Two injection sites were randomly selected, and 0.1 mL of CA mycelium suspension was injected into the epidermis and dermis of the back of mice. Group N was treated with sterile water for injection (SWFI).

      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  19. Identification of an Intestinal Microbiota Signature Associated With the Severity of Necrotic Enteritis

    • Frontiers in Microbiology
    • Necrotic enteritis (NE), an economically devastating disease of poultry caused by pathogenic Clostridium perfringens, is known to induce small intestinal lesions and dysbiosis. However, the intestinal microbes that are associated with NE severity are yet to be characterized. Here, we investigated the link between the ileal microbiota and disease severity in a chicken model of clinical NE using 16S rRNA gene sequencing.

      • Clostridium perfringens
      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  20. Characterization of the Genitourinary Microbiome of 1,165 Middle-Aged and Elderly Healthy Individuals

    • Frontiers in Microbiology
    • Accumulated evidence shows that complex microbial communities resides in the healthy human urinary tract and can change in urological disorders. However, there lacks a comprehensive profiling of the genitourinary microbiota in healthy cohort. Here, we performed 16S rRNA gene sequencing of midstream urine specimens from 1,172 middle-aged and elderly healthy individuals.

      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  21. Discovery and Bioactivity of the Novel Lasso Peptide Microcin Y

    • Journal of Agricultural and Food Chemistry
    • Lasso peptides, a class of ribosomally synthesized and post-translationally modified peptides (RiPPs) secreted by bacteria, have antimicrobial activity. Here, a novel lasso peptide, microcin Y (MccY), was discovered and characterized. The gene cluster for MccY synthesis was cloned for expression in Escherichia coli. This peptide was purified by HPLC and characterized by Q-TOF.

      • Salmonella
      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  22. Lactosmart: A Novel Therapeutic Molecule for Antimicrobial Defense

    • Frontiers in Microbiology
    • The problem of antibiotic resistance has prompted researchers around the globe to search for new antimicrobial agents. Antimicrobial proteins and peptides are naturally secreted by almost all the living organisms to fight infections and can be safer alternatives to chemical antibiotics. Lactoferrin (LF) is a known antimicrobial protein present in all body secretions.

      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  23. Phytochemical Profile and Microbiological Activity of Some Plants Belonging to the Fabaceae Family

    • Antibiotics
    • This study aimed to investigate the chemical composition and the activity against Staphylococcus aureus (S. aureus) (ATCC 25923), Streptococcus pyogenes (S. pyogenes) (ATCC 19615), Escherichia coli (E. coli) (ATCC 25922), Pseudomonas aeruginosa (P. aeruginosa) (ATCC 27853), Shigella flexneri (S. flexneri) (ATCC 12022), Salmonella typhimurium (S. typhimurium) (ATCC 14028), Haemophillus influenzae (H. influenza) type B (ATCC 10211) and two fungal strains: Candida albicans (C.

      • Salmonella
      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  24. Chemical composition, antimicrobial, antioxidant and cytotoxic activity of the essential oil from the leaves of Stachys pilifera Benth

    • FEMS Microbiology Letters
    • ABSTRACT Stachys pilifera Benth is an endemic species of Stachys family found in Iran with a wide application as an herbal tea. The objective of this research was to evaluate the antimicrobial, antioxidant and cytotoxic activity of the essential oil from the aerial parts of S. pilifera.

      • Salmonella
      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
      • Bacillus cereus
  25. Polyphasic characterization of and genomic insights into a haloalkali-tolerant Saccharibacillus alkalitolerans sp. nov., that produces three cellulase isozymes and several antimicrobial compounds

    • Antonie van Leeuwenhoek

      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens