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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1 - 12 of 12

  1. Interplay of CodY and CcpA in Regulating Central Metabolism and Biofilm Formation in Staphylococcus aureus

    • Journal of Bacteriology
    • Journal of Bacteriology, Ahead of Print. Staphylococcus aureus is a medically important pathogen with high metabolic versatility allowing it to infect various niches within a host. S. aureus utilizes two major transcriptional regulators, namely, CodY and CcpA, to remodel metabolic and virulence gene expression in response to changing environmental conditions.

      • Bacterial pathogens
      • Staphylococcus aureus
  2. Role of Staphylococcus aureus Tet38 in Transport of Tetracycline and Its Regulation in a Salt Stress Environment

    • Journal of Bacteriology
    • Journal of Bacteriology, Ahead of Print. Staphylococcus aureus Tet38 efflux pump has multiple functions, including conferring resistance to tetracycline and other compounds and enabling internalization and survival within epithelial cells. In this study, we evaluated the effects of sodium and potassium on tet38 expression. These monovalent cations are known to play a role in transport by the related S. aureus TetK and B.

      • Bacterial pathogens
      • Staphylococcus aureus
  3. Staphylococcus aureus Does Not Synthesize Arginine from Proline under Physiological Conditions

    • Journal of Bacteriology
    • Journal of Bacteriology, Ahead of Print. The Gram-positive pathogen Staphylococcus aureus is the only bacterium known to synthesize arginine from proline via the arginine-proline interconversion pathway despite having genes for the well-conserved glutamate pathway. Since the proline-arginine interconversion pathway is repressed by CcpA-mediated carbon catabolite repression (CCR), CCR has been attributed to the arginine auxotrophy of S. aureus.

      • Bacterial pathogens
      • Staphylococcus aureus
  4. Genome sequencing of an historic Staphylococcus aureus collection reveals new enterotoxin genes and sheds light on the evolution and genomic organisation of this key virulence gene family

    • Journal of Bacteriology
    • We take advantage of an historic collection of 133 Staphylococcus aureus strains accessioned between 1924 and 2016, whose genomes have been long-read sequenced as part of a major National Collection of Type Cultures (NCTC) initiative, to conduct a gene family-wide computational analysis of enterotoxin genes. We identify two novel Staphylococcal enterotoxin (pseudo)genes (sel29p and sel30), the former of which has not been observed in any contemporary strain to date.

      • Staphylococcus aureus
      • Bacterial pathogens
  5. Inactivation of the Pta-AckA pathway impairs fitness of Bacillus anthracis during overflow metabolism.

    • Journal of Bacteriology
    • Under conditions of glucose excess, aerobically growing bacteria predominantly direct carbon flux towards acetate fermentation, a phenomenon known as overflow metabolism or the bacterial ‘Crabtree effect’. Numerous studies of the major acetate-generating pathway, the Pta-AckA, revealed its important role in bacterial fitness through the control of central metabolism to sustain balanced growth and cellular homeostasis.

      • Staphylococcus aureus
      • Bacterial pathogens
  6. A screen for antibiotic resistance determinants reveals a fitness cost of the flagellum in Pseudomonas aeruginosa.

    • Journal of Bacteriology
    • The intrinsic resistance of Pseudomonas aeruginosa to many antibiotics limits treatment options for pseudomonal infections. P. aeruginosa's outer membrane is highly impermeable and decreases antibiotic entry into the cell. We used an unbiased, high-throughput approach to examine mechanisms underlying outer membrane-mediated antibiotic exclusion. Insertion Sequencing (INSeq) identified genes that altered fitness in the presence of linezolid, rifampicin, and vancomycin, antibiotics to which P.

      • Vibrio
      • Staphylococcus aureus
      • Bacterial pathogens
  7. The msaABCR operon regulates the response to oxidative stress in Staphylococcus aureus

    • Journal of Bacteriology
    • Staphylococcus aureus has evolved a complex regulatory network that controls a multitude of defense mechanisms against the deleterious effects of oxidative stress stimuli subsequently leading to the pathogen's survival and persistence in the hosts. Previously, we characterized the msaABCR operon as a regulator of virulence, antibiotic resistance, and the formation of persister cells in S. aureus.

      • Bacterial pathogens
      • Staphylococcus aureus
  8. The msaABCR operon regulates the response to oxidative stress in Staphyloc

    • Journal of Bacteriology
    • Staphylococcus aureus has evolved a complex regulatory network that controls a multitude of defense mechanisms against the deleterious effects of oxidative stress stimuli subsequently leading to the pathogen's survival and persistence in the hosts. Previously, we characterized the msaABCR operon as a regulator of virulence, antibiotic resistance, and the formation of persister cells in S. aureus.

      • Staphylococcus aureus
      • Bacterial pathogens
  9. Guanine limitation results in CodY-dependent and -independent alteration of Staphylococcus aureus physiology and gene expression

    • Journal of Bacteriology
    • In Staphylococcus aureus, the global transcriptional regulator CodY modulates the expression of hundreds of genes in response to the availability of GTP and the branched-chain amino acids isoleucine, leucine, and valine (ILV). CodY DNA-binding activity is high when GTP and ILV are abundant. When GTP and ILV are limited, CodY's affinity for DNA drops, altering expression of CodY regulated targets. In this work, we investigated the impact of guanine nucleotides on S.

      • Staphylococcus aureus
      • Bacterial pathogens
  10. Mechanisms of pyocyanin toxicity and genetic determinants of resistance in Staphylococcus aureus

    • Journal of Bacteriology
    • Pseudomonas aeruginosa and Staphylococcus aureus are commonly isolated from polymicrobial infections, such as wound infections and chronic respiratory infections of persons with cystic fibrosis. Despite their co-isolation, P. aeruginosa produces substances toxic to S. aureus, including pyocyanin, a blue pigmented molecule that functions in P. aeruginosa virulence. Pyocyanin inhibits S.

      • Staphylococcus aureus
      • Bacterial pathogens
  11. Heterologous Expression of Der Homologs in Escherichia coli der Mutant and Their Functional Complementation

    • Journal of Bacteriology
    • The unique Escherichia coli GTPase Der (Double Era-like GTPase), which contains tandemly repeated GTP-binding domains, has been shown to play an essential role in 50S ribosomal subunit biogenesis. The depletion of Der results in the accumulation of precursors of 50S ribosomal subunits that are structurally unstable at low Mg2+ concentrations. Der homologs are ubiquitously found in eubacteria. Conversely, very few are conserved in eukaryotes and none is conserved in archaea.

      • Staphylococcus aureus
      • Bacterial pathogens
  12. Binding of c-di-AMP to the Staphylococcus aureus sensor kinase KdpD occurs via the USP domain and down-regulates the expression of the Kdp potassium transporter

    • Journal of Bacteriology
    • Nucleotide signalling molecules are important intracellular messengers that regulate a wide range of biological functions. The human pathogen Staphylococcus aureus produces the signalling nucleotide cyclic di-adenosine monophosphate (c-di-AMP). This molecule is common among Gram-positive bacteria and in many organisms essential for survival under standard laboratory growth conditions. In this study, we investigated the interaction of c-di-AMP with the S. aureus KdpD protein.

      • Staphylococcus aureus
      • Bacterial pathogens