An official website of the United States government.

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1 - 25 of 26

  1. Evaluating the Safety of Sous-Vide Cooking for Beef Products Inoculated with Single Strains of Salmonella enterica and Escherichia coli O157

    • Journal of Food Protection
    • Sous-vide cooking is a growing trend among retailers and consumers. Foodborne pathogens may survive the cooking if non-validated parameters are used or if pathogens have enhanced thermal resistance. Pathogen inactivation from sous-vide cooking was determined when introduced directly to beef products or via contaminated spices, and with or without a finishing step.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
      • Salmonella
  2. Effect of ground beef irradiation on annual nontyphoidal Salmonella and Escherichia coli O157 burden and direct healthcare costs in the United States: A simulation study

    • Journal of Food Protection
    • Over 20% of E. coli O157 illnesses and over 5% of Salmonella illnesses are estimated to be attributable to beef consumption in the United States. Irradiating ground beef is one possible method to reduce disease burden. We simulated the effect of ground beef irradiation on illnesses, hospitalizations, deaths, and direct healthcare costs from ground beef-associated E.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
      • Salmonella
  3. Evaluation of Peracetic Acid Treatment on Beef Trimmings and Subprimals against Salmonella and E. coli O157:H7 within Regulatory Retained Water Limitations

    • Journal of Food Protection
    • The application of antimicrobial treatments to beef trimmings prior to grinding for the reduction of microbial contamination in ground beef has increased recently. However, raw single-ingredient meat products are not permitted by Food Safety and Inspection Services (FSIS) to retain more than 0.49% water resulting from post-evisceration processing. The effectiveness of antimicrobials with the limited water retention is not well documented.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
      • Salmonella
  4. Minimum Concentrations of Slow Pyrolysis Paper and Walnut Hull Cyclone Biochars Needed to Inactivate Escherichia coli O157:H7 in Soil

    • Journal of Food Protection
    • Antimicrobial properties of biochar have been attributed to its ability to inactivate foodborne pathogens in soil, to varying degrees. High concentrations of biochar have reduced E. coli O157:H7 in soil and dairy manure compost, based on alkaline pH. Preliminary studies evaluating 31 different biochars determined that two slow pyrolysis biochars (paper biochar and walnut hull cyclone biochar) were the most effective at inactivating E. coli in soil.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
  5. Identification of Contamination Sources and Assessment of Risk Factors Associated with the Occurrence of Escherichia coli O157:H7 on Small-scale Cow-calf Operations in Oklahoma and Louisiana

    • Journal of Food Protection
    • Escherichia coli O157:H7 is a human pathogen that exists as part of the commensal microflora of cattle and is shed in animal feces. Little is known about the effect of management practices on its occurrence and transmission on small-scale cow-calf operations. Identification of risk factors associated with farm practices could help implement effective measures to control E. coli O157:H7. This study quantified the risk of E.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
  6. Phage biocontrol effectively reduces contamination of wheat with Shiga toxin-producing Escherichia coli O121 and O26 without adverse effects on flour quality

    • Journal of Food Protection
    • Contamination of wheat flours with Shiga toxin-producing E. coli (STEC) is a concern for the milling industry. Milling-specific interventions are needed to address this food safety hazard. The objectives for this study were to determine the efficacy of bacteriophage treatment in reducing wheat STEC contamination during tempering and assess its effects on flour milling and baking quality.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
  7. Impact of the Probiotic Organism Megasphaera elsdenii on Escherichia coli O157:H7 Prevalence in Finishing Cattle

    • Journal of Food Protection
    • Feedlot cattle commonly shed the foodborne pathogen Escherichia coli O157:H7 in their feces. Megasphaera elsdenii (ME), a lactic acid-utilizing bacterium, is commonly administered to cattle to avoid lactate accumulation in the rumen and to control ruminal acidosis. The impact of administering ME on foodborne pathogen prevalence, specifically E. coli O157:H7, has not been explored. The purpose of this study was to quantify E.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
  8. Occurrence of the seven most common serotypes of Shiga toxin-producing Escherichia coli in beef cuts produced in meat-processing plants in the state of São Paulo, Brazil

    • Journal of Food Protection
    • Healthy cattle are considered the main reservoir of Shiga toxin-producing Escherichia coli (STEC) strains, so in some places in the world, products derived from beef are the most common source for disease outbreaks caused by these bacteria. Therefore, in order to guarantee that the beef produced by our slaughterhouses is safe, there is a need for continuous monitoring of these bacteria.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  9. Fate of Salmonella and Enterohemorrhagic Escherichia coli on Wheat Grain

    • Journal of Food Protection
    • Wheat flour has been connected to outbreaks of foodborne illnesses with increased frequency in recent years, specifically, outbreaks involving Salmonella enterica and enterohemorrhagic Escherichia coli (EHEC). However, there is little information regarding the survival of these pathogens on wheat grain during long-term storage in a low-moisture environment. This study aims to evaluate the long-term survival of these enteric pathogens on wheat grain over the course of a year.

      • Salmonella
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
      • Produce Safety
      • Post Harvest
  10. Shiga Toxin-Producing Escherichia coli (STEC) and STEC-Associated Virulence Genes in Raw Ground Pork in Canada

    • Journal of Food Protection
    • Shiga toxin-producing Escherichia coli (STEC) O157:H7/NM and some non-O157 STEC are foodborne pathogens. In response to pork-associated O157 STEC outbreaks in Canada, we investigated the occurrence of STEC in Canadian retail raw ground pork during the period of November 1, 2014 and March 31, 2016. Isolated STEC were characterized to determine the Shiga-toxin gene ( stx ) subtype and the presence of virulence genes encoding intimin ( eae ), and enterohemorrhagic E. coli hemolysin (hlyA) .

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  11. Microbiological Survey of Wheat Flour Sold at Retail in Canada, 2018-2019

    • Journal of Food Protection
    • Following two O121 STEC outbreaks linked to wheat flour, this study was conducted to gain baseline information on the occurrence of bacterial pathogens and levels of indicator organisms in wheat flour in Canada. A total of 347 pre-packaged wheat flour samples were analyzed for Salmonella spp., Shiga Toxin-Producing Escherichia coli (STEC), Listeria monocytogenes ( L. monocytogenes ) , aerobic colony count (ACC), total coliforms, and generic Escherichia coli ( E. coli ) .

      • Listeria monocytogenes
      • Salmonella
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  12. Shiga Toxin-Producing Escherichiacoli in Feces of Finisher Pigs: Isolation, Identification and Public Health Implications of Major and Minor Serogroups

    • Journal of Food Protection
    • Shiga toxin-producing Escherichia coli (STEC) are major foodborne human pathogens that cause mild to hemorrhagic colitis, which could lead to complications of hemolytic uremic syndrome.  Seven serogroups, O26, O45, O103, O111, O121, O145 and O157, account for the majority of the STEC illnesses in the US.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  13. Thermal Resistance of Single Strains of Shiga Toxin-Producing Escherichia coli O121:H19 and O157:H7 Based on Culture Preparation Method and Osmolyte-Reduced Water Activity

    • Journal of Food Protection
    • Pathogen thermal resistance studies on low-water activity foods (LWAF) use a variety of methods to inoculate food, as well as strategies to reduce water activity, which can influence thermal resistance observations.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  14. Analysis of bacterial diversity in relation to presence of Top 7 Shiga toxin-producing Escherichia coli (STEC) throughout Australian beef abattoirs

    • Journal of Food Protection
    • There is increasing evidence that diversity changes in bacterial communities of beef cattle correlates to the presence of Shiga toxin-producing Escherichia coli (STEC). However, studies that found an association between STEC and bacterial diversity have been focused on pre-slaughter stages in the beef supply chain.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  15. Evaluation of Ultraviolet Light (UVC) and UVC-Ozone Combination as Fresh Beef Interventions against Shiga Toxin-Producing Escherichia coli (STEC), Salmonella, and Listeria monocytogenes and Their Effects on Beef Quality

    • Journal of Food Protection
    • This research study was based on ultraviolet (UVC) light and a combination of UVC-ozone treatments that have recently received attention from the beef processing industry as antimicrobial interventions that leave no chemical residues on products. The objectives were to evaluate effectiveness of UVC and UVC in combination with gaseous ozone treatments for inactivation of pathogenic bacteria on fresh beef and the impact on fresh beef quality.

      • Salmonella
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
      • Escherichia coli O157:H7
      • Listeria monocytogenes
  16. Survival of Shiga Toxin-Producing Escherichia coli (STEC) in Various Wild Animal Feces that May Contaminate Produce

    • Journal of Food Protection
    • Domestic and wild animal intrusions are identified as a food safety risk during fresh produce production. The purpose of this study was to evaluate the survival of Shiga toxin-producing Escherichia coli (STEC) in cattle, feral pig, waterfowl, deer, and raccoon feces from sources in California, Delaware, Florida, and Ohio. Fecal samples were inoculated with a cocktail of rifampicin resistant STEC (O103, O104, O111, O145, and O157 (104 to 106 CFU/g feces).

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  17. Evaluation of Vacuum Steam Treatment of Hard Red Spring Wheat on flour quality and reduction of Escherichia coli O121 and Salmonella Enteritidis PT30

    • Journal of Food Protection
      • Salmonella
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
      • Salmonella
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  18. Effect of pH on Survival of Escherichia coli O157, Escherichia coli O121, and Salmonella enterica during Desiccation and Short-Term Storage

    • Journal of Food Protection
      • Salmonella
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  19. Desiccation and Thermal Resistance of Escherichia coli O121 in Wheat Flour

    • Journal of Food Protection
    • Journal of Food Protection, Volume 82, Issue 8, Page 1308-1313, August 2019.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  20. DNA Microarray-Based Genomic Characterization of the Pathotypes of Escherichia coli O26, O45, O103, O111, and O145 Isolated from Feces of Feedlot Cattle

    • Journal of Food Protection
    • Journal of Food Protection, Volume 82, Issue 3, Page 395-404, March 2019.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  21. Comparative Evaluation of a Novel Phage Protein Ligand Assay and Immunomagnetic Separation Method To Isolate the Seven Top Serogroups of Escherichia coli (O157, O26, O103, O145, O111, O45, and O121) in Foods at Risk

    • Journal of Food Protection
    • Journal of Food Protection, Volume 80, Issue 12, Page 1973-1979, November 2017.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  22. Characterization and Virulence Potential of Serogroup O113 Shiga Toxin–Producing Escherichia coli Strains Isolated from Beef and Cattle in the United States

    • Journal of Food Protection
    • Journal of Food Protection, Volume 80, Issue 3, Page 383-391, March 2017. Shiga toxin–producing Escherichia coli (STEC) of serotype O113:H21 have caused severe diseases but are unusual in that they do not produce the intimin protein required for adherence to intestinal epithelial cells. Strains of serogroup O113 are one of the most common STEC found in ground beef and beef products in the United States, but their virulence potential is unknown.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  23. National Survey of Shiga Toxin–Producing Escherichia coli Serotypes O26, O45, O103, O111, O121, O145, and O157 in Australian Beef Cattle Feces

    • Journal of Food Protection
    • et al.

      • Bacterial pathogens
      • Enterohemorrhagic Escherichia coli
  24. Multiplex Real-Time PCR Assays for Screening of Shiga Toxin 1 and 2 Genes, Including All Known Subtypes, and Escherichia coli O26-, O111-, and O157-Specific Genes in Beef and Sprout Enrichment Cultures

    • Journal of Food Protection
    • Harada, Tetsuya et al. Shiga toxin family members have recently been classified using a new nomenclature into three Stx1 subtypes (Stx1a, Stx1c, and Stx1d) and seven Stx2 subtypes (Stx2a, Stx2b, Stx2c, Stx2d, Stx2e, Stx2f, and Stx2g). To develop screening methods for Stx genes, including all of these subtype genes, and Escherichia coli O26-, O111-, and O157-specific genes in laboratory investigations of Shiga toxin–producing E.

      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens
  25. Sequence of Colonization Determines the Composition of Mixed Biofilms by Escherichia coli O157:H7 and O111:H8 Strains

    • Journal of Food Protection
    • Wang, Rong et al.

      • Escherichia coli O157:H7
      • Enterohemorrhagic Escherichia coli
      • Bacterial pathogens