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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1 - 25 of 33

  1. Use of Human Intestinal Enteroids to Evaluate Persistence of Infectious Human Norovirus in Seawater

    • Emerging Infectious Diseases
    • Little data on the persistence of human norovirus infectivity are available to predict its transmissibility. Using human intestinal enteroids, we demonstrate that 2 human norovirus strains can remain infectious for several weeks in seawater. Such experiments can improve understanding of factors associated with norovirus survival in coastal waters and shellfish.

      • Viruses
      • Norovirus
  2. Replication in Human Intestinal Enteroids of Infectious Norovirus from Vomit Samples

    • Emerging Infectious Diseases
    • M. Hagbom et al. A typical clinical symptom of human norovirus infection is projectile vomiting. Although norovirus RNA and viral particles have been detected in vomitus, infectivity has not yet been reported. We detected replication-competent norovirus in 25% of vomit samples with a 13-fold to 714-fold increase in genomic equivalents, confirming infectious norovirus.

      • Viruses
      • Norovirus
  3. Global Trends in Norovirus Genotype Distribution among Children with Acute Gastroenteritis

    • Emerging Infectious Diseases
    • J. L. Cannon et al. Noroviruses are a leading cause of acute gastroenteritis (AGE) among adults and children worldwide. NoroSurv is a global network for norovirus strain surveillance among children <5 years of age with AGE. Participants in 16 countries across 6 continents used standardized protocols for dual typing (genotype and polymerase type) and uploaded 1,325 dual-typed sequences to the NoroSurv web portal during 2016–2020.

      • Viruses
      • Norovirus
  4. Rare Norovirus GIV Foodborne Outbreak, Wisconsin, USA

    • Emerging Infectious Diseases
    • L. Barclay et al. We report a norovirus GIV outbreak in the United States, 15 years after the last reported outbreak. During May 2016 in Wisconsin, 53 persons, including 4 food handlers, reported being ill. The outbreak was linked to individually prepared fruit consumed as a fruit salad. The virus was phylogenetically classified as a novel GIV genotype.

      • Viruses
      • Norovirus
  5. Non-Norovirus Viral Gastroenteritis Outbreaks Reported to the National Outbreak Reporting System, USA, 2009–2018

    • Emerging Infectious Diseases
    • C. P. Mattison et al. During 2009–2018, four adenovirus, 10 astrovirus, 123 rotavirus, and 107 sapovirus gastroenteritis outbreaks were reported to the US National Outbreak Reporting System (annual median 30 outbreaks). Most were attributable to person-to-person transmission in long-term care facilities, daycares, and schools. Investigations of norovirus-negative gastroenteritis outbreaks should include testing for these viruses.

      • Viruses
      • Norovirus
  6. Detection of Norovirus Variant GII.4 Hong Kong in Asia and Europe, 2017−2019

    • Emerging Infectious Diseases
    • M. Chan et al. We report a new norovirus GII.4 variant, GII.4 Hong Kong, with low-level circulation in 4 Eurasia countries since mid-2017. Amino acid substitutions in key residues on the virus capsid associated with the emergence of pandemic noroviruses suggest that GII.4 Hong Kong has the potential to become the next pandemic variant.

      • Viruses
      • Norovirus
  7. Characterizing Norovirus Transmission from Outbreak Data, United States

    • Emerging Infectious Diseases
    • M. K. Steele et al. Norovirus is the leading cause of acute gastroenteritis outbreaks in the United States. We estimated the basic (R0) and effective (Re) reproduction numbers for 7,094 norovirus outbreaks reported to the National Outbreak Reporting System (NORS) during 2009–2017 and used regression models to assess whether transmission varied by outbreak setting. The median R0 was 2.75 (interquartile range [IQR] 2.38–3.65), and median Re was 1.29 (IQR 1.12–1.74).

      • Norovirus
      • Viruses
  8. Norovirus Outbreak Surveillance, China, 2016–2018

    • Emerging Infectious Diseases
    • M. Jin et al. CaliciNet China, a network of provincial, county, and city laboratories coordinated by the Chinese Centers for Disease Control and Prevention, was launched in October 2016 to monitor the epidemiology and genotype distribution of norovirus outbreaks in China. During October 2016–September 2018, a total of 556 norovirus outbreaks were reported, and positive fecal samples from 470 (84.5%) outbreaks were genotyped.

      • Norovirus
      • Viruses
  9. Human Norovirus Infection in Dogs, Thailand

    • Emerging Infectious Diseases
    • In July 2018, recombinant norovirus GII.Pe-GII.4 Sydney was detected in dogs who had diarrhea in a kennel and in children living on the same premises in Thailand. Whole-genome sequencing and phylogenetic analysis of 4 noroviruses from Thailand showed that the canine norovirus was closely related to human norovirus GII.Pe-GII.4 Sydney, suggesting human-to-canine transmission.

      • Norovirus
      • Viruses
      • Norovirus
      • Viruses
  10. Recombinant Nontypeable Genotype II Human Noroviruses in the Americas

    • Emerging Infectious Diseases
    • K. Tohma et al. We report multiple nontypeable genotype II noroviruses circulating in South America; nucleotides differed by >25% from those of other genotypes. These viruses have been circulating in the Americas for ≈20 years and show recombination with other genotypes. Clues to norovirus natural history can guide development of treatment and prevention plans.

      • Norovirus
      • Viruses
  11. Infectivity of Norovirus GI and GII from Bottled Mineral Water during a Waterborne Outbreak, Spain

    • Emerging Infectious Diseases
    • S. Guix et al. During a waterborne outbreak of norovirus in Spain, we estimated 50% illness doses for a group of exposed (secretor) persons to be 556 (95% CI 319–957) genome copies/day for norovirus GI and 2,934 (95% CI 1,683–5,044) genome copies/day for norovirus GII. Use of a propidium monoazide viability assay reduced these values.

      • Norovirus
      • Viruses
  12. Use of Human Intestinal Enteroids to Detect 
Human Norovirus Infectivity

    • Emerging Infectious Diseases
    • Tools to detect human norovirus infectivity have been lacking. Using human intestinal enteroid cultures inoculated with GII.Pe-GII.4 Sydney–infected fecal samples, we determined that a real-time reverse transcription PCR cycle threshold cutoff of 30 may indicate infectious norovirus. This finding could be used to help guide infection control.

      • Norovirus
      • Viruses
      • Norovirus
      • Viruses
  13. Recombinant GII.Pe-GII.4 Norovirus, Thailand, 2017–2018

    • Emerging Infectious Diseases
    • During June 2017–December 2018, norovirus was responsible for 10.9% of acute gastroenteritis cases in Thailand. Genogroup I (GI) was found in 14% of samples, of which 12 were co-infected with genogroup II (GII). In 35.8% of samples, GII.Pe-GII.4 Sydney predominated. Diverse recombinant strains of GI and GII norovirus co-circulated year-round.

      • Norovirus
      • Viruses
  14. Emergence of a Novel Recombinant Norovirus GII.P16-GII.12 Strain Causing Gastroenteritis, Alberta, Canada

    • Emerging Infectious Diseases
    • We identified a novel recombinant GII.P16-GII.12 norovirus associated with epidemic and endemic gastroenteritis during March 1, 2018–February 12, 2019, in Alberta, Canada. GII.12 viruses have not been detected in Alberta since 2000. Comparing the full genome of this strain to previously published sequences revealed this virus to be a novel recombinant strain.

      • Norovirus
      • Viruses
  15. Higher Viral Load of Emerging Norovirus GII.P16-GII.2 than Pandemic GII.4 and Epidemic GII.17, Hong Kong, China

    • Emerging Infectious Diseases
    • S. Cheung et al.

      • Norovirus
      • Viruses
  16. Norovirus Gastroenteritis among Hospitalized Patients, Germany, 2007–2012

    • Emerging Infectious Diseases
    • We estimated numbers of hospitalizations for norovirus gastroenteritis (NGE) and associated medical costs in Germany, where norovirus testing is high because reimbursement is affected. We extracted aggregate data for patients hospitalized with a primary or secondary code from the International Classification of Diseases, 10th Revision (ICD-10), NGE diagnosis during 2007–2012 from the German Federal Statistics Office.

      • Norovirus
      • Viruses
  17. Human Norovirus Replication in Human Intestinal Enteroids as Model to Evaluate Virus Inactivation

    • Emerging Infectious Diseases
    • Human noroviruses are a leading cause of epidemic and endemic acute gastroenteritis worldwide and a leading cause of foodborne illness in the United States. Recently, human intestinal enteroids (HIEs) derived from human small intestinal tissue have been shown to support human norovirus replication. We implemented the HIE system in our laboratory and tested the effect of chlorine and alcohols on human norovirus infectivity.

      • Norovirus
      • Viruses
  18. Foodborne Outbreaks Caused by Human Norovirus GII.P17-GII.17–Contaminated Nori, Japan, 2017

    • Emerging Infectious Diseases
    • Seven foodborne norovirus outbreaks attributable to the GII.P17-GII.17 strain were reported across Japan in 2017, causing illness in a total of 2,094 persons. Nori (dried shredded seaweed) was implicated in all outbreaks and tested positive for norovirus. Our data highlight the stability of norovirus in dehydrated food products.

      • Norovirus
      • Viruses
  19. Phylogeny and Immunoreactivity of Norovirus GII.P16-GII.2, Japan, Winter 2016–17

    • Emerging Infectious Diseases
    • K. Nagasawa et al.

      • Viruses
      • Norovirus
  20. Increased Detection of Emergent Recombinant Norovirus GII.P16-GII.2 Strains in Young Adults, Hong Kong, China, 2016–2017

    • Emerging Infectious Diseases
    • A new recombinant norovirus GII.P16-GII.2 outnumbered pandemic GII.4 as the predominant GII genotype in the winter of 2016–2017 in Hong Kong, China. Half of hospitalized case-patients were older children and adults, including 13 young adults. This emergent norovirus targets a wider age population compared with circulating pandemic GII.4 strains.

      • Norovirus
      • Viruses
  21. Norovirus in Bottled Water Associated with Gastroenteritis Outbreak, Spain, 2016

    • Emerging Infectious Diseases
    • In April 2016, an outbreak of gastrointestinal illness (4,136 cases) occurred in Catalonia, Spain. We detected high levels of norovirus genogroups I and II in office water coolers associated with the outbreak. Infectious viral titer estimates were 33–49 genome copies/L for genogroup I and 327–660 genome copies/L for genogroup II.

      • Norovirus
      • Viruses
  22. Global Spread of Norovirus GII.17 Kawasaki 308, 2014–2016

    • Emerging Infectious Diseases
    • Analysis of complete capsid sequences of the emerging norovirus GII.17 Kawasaki 308 from 13 countries demonstrated that they originated from a single haplotype since the initial emergence in China in late 2014. Global spread of a sublineage SL2 was identified. A new sublineage SL3 emerged in China in 2016.

      • Norovirus
      • Viruses
  23. Recombinant GII.P16-GII.2 Norovirus, Taiwan, 2016

    • Emerging Infectious Diseases
    • In Taiwan, acute gastroenteritis outbreaks caused by a new norovirus genotype GII.2 increased sharply toward the end of 2016. Unlike previous outbreaks, which often involved restaurants, GII.2 outbreaks mainly occurred in schools. Phylogenetic analysis indicates that these noroviruses are recombinant GII.P16-GII.2 strains.

      • Norovirus
      • Viruses
  24. Norovirus GII.17 as Major Epidemic Strain in Italy, Winter 2015–16

    • Emerging Infectious Diseases
    • In winter 2015–16, norovirus GII.17 Kawasaki 2014 emerged as a cause of sporadic gastroenteritis in children in Italy. Median patient age was higher for those with GII.17 than GII.4 infection (55 vs. 24 months), suggesting limited cross-protection for older children.

      • Norovirus
      • Viruses
  25. Association of GII.P16-GII.2 Recombinant Norovirus Strain with Increased Norovirus Outbreaks, Guangdong, China, 2016

    • Emerging Infectious Diseases
    • An unusual prevalence of recombinant GII.2 noroviruses (GII.P16-GII.2) in Guangdong, China, at the end of 2016 caused a sharp increase in outbreaks of acute gastroenteritis. This event was another non-GII.4 epidemic that emerged after the GII.17 viruses in 2014 and 2015 and warrants global surveillance.

      • Norovirus
      • Viruses