An official website of the United States government.

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1 - 25 of 58

  1. Temporal variability of microbiome in the different plankton hosts revealed distinct environmental persistence of Vibrio parahaemolyticus in shrimp farms

    • Microbiological Research
    • Plankton-bacteria interactions may play essential roles in maintaining the persistence of pathogenic Vibrio spp. However, the actual plankton host of the toxigenic Vibrio parahaemolyticus that harbors thermostable direct hemolysin (TDH) and TDH-related hemolysin (TRH) remains unclear.

      • Bacterial pathogens
      • Vibrio
  2. Reconditioning of plant metabolism by arbuscular mycorrhizal networks in cadmium contaminated soils: Recent perspectives

    • Microbiological Research
    • Cadmium (Cd) is one of the most perilous nonessential heavy metal for plants, owing to its high water solubility and obstruction with various physiological and biochemical processes. It enters food chain via plant uptake from contaminated soil, posing a grave menace to ecosystem and mankind. Green remediation comprises approaches intended at prudent use of natural resources for increasing profits to humans and environment.

      • Chemical contaminants
      • Heavy Metals
  3. Dual Inoculation With Rhizosphere-promoting Bacterium Bacillus cereus and Beneficial Fungus Peniophora cinerea Improves Salt Stress Tolerance and Productivity in Willow

    • Microbiological Research
    • Utilization of rhizosphere microorganisms to improve plant growth and salt tolerance has recently attracted widespread attention. The growth and salt tolerance of willows inoculated with Bacillus cereus JYZ-SD2 and Peniophora cinerea XC were studied under different salt stress conditions. The results showed that the chlorophyll content of willow cuttings inoculated with the XC strain increased significantly by 51.27%.

      • Bacterial pathogens
      • Bacillus cereus
  4. Biocontrol of methicillin-resistant Staphylococcus aureus using a virulent bacteriophage derived from a temperate one

    • Microbiological Research
    • Methicillin-resistant Staphylococcus aureus (MRSA) poses a serious threat to global public health due to its resistance to specific antibiotics. Bacteriophages particularly the lytic ones are promoted as a potential powerful-tool to combat infections caused by drug resistant bacteria; while several disadvantages limited the application of the temperate ones.

      • Bacterial pathogens
      • Staphylococcus aureus
  5. High prevalence of qnrVC variants in Vibrio spp. isolated from food samples in South China

    • Microbiological Research
    • Phenotypic resistance to fluoroquinolones due to mutational changes in the gyrA and parC genes is common among clinical Vibrio strains; the plasmid-mediated quinolone resistance (PMQR) qnrVC genes were also suggested to play a role in enhancing resistance development.

      • Bacterial pathogens
      • Vibrio
  6. Transposon insertion sequencing analysis unveils novel genes involved in luxR expression and quorum sensing regulation in Vibrio alginolyticus

    • Microbiological Research
    • Vibrio alginolyticus is an important conditional pathogen of fish, shrimp, shellfish, and other marine aquaculture animals that causes huge economic losses to the marine aquaculture industries. Temperature has a significant influence on its quorum sensing (QS) system, which is essential for its various physiological functions.

      • Bacterial pathogens
      • Vibrio
  7. Whole Transcriptome Sequencing Analysis of Synergistic Combinations of Plant-based Antimicrobials and Zinc Oxide Nanoparticles against Campylobacter jejuni

    • Microbiological Research
    • The emergence of antibiotic resistance among animal farms impels the development of novel antimicrobials or strategies for agri-food production. The combinational use of agents to achieve a synergistic antimicrobial effect provides many advantages such as dosage reduction, shortened treatment time, and avoidance of antimicrobial resistance.

      • Bacterial pathogens
      • Campylobacter
  8. Transcriptional insight into the effect of benzalkonium chloride on resistance and virulence potential in Salmonella Typhimurium

    • Microbiological Research
    • Benzalkonium chloride (BC), a class of quaternary ammonium compounds (QACs), is widely used as a surface disinfectant in food industries and hospitals. To date, little is known about the underlying mechanisms of how bacterial pathogens respond to and develop resistance against QACs.

      • Bacterial pathogens
      • Salmonella
  9. Effect of antibiotics and sanitizers on Salmonella biofilms associated with seafood contact surfaces

    • Microbiological Research
    • This study investigates the effect of antibiotics and sanitizers on biofilm forming Salmonella isolated from different seafood contact surfaces. Four Salmonella were isolated from 384 swab samples collected from various contact surfaces of fishing boats, fish landing centres and seafood processing plants. One out of four isolates was from the fishing boat (FB I -1) other three isolates were from the seafood processing plant (FPPII -4, FPPII- 5, FPPI-3).

      • Bacterial pathogens
      • Salmonella
  10. Genetic and drug susceptibility profiles of mcr-1-bearing foodborne Salmonella strains collected in Shenzhen, China during the period 2014–2017

    • Microbiological Research
    • Colistin resistance mediated by mcr-1-bearing plasmids poses a new challenge to treatment of Salmonella infections.

      • Bacterial pathogens
      • Salmonella
  11. Genome mining, phylogenetic, and functional analysis of arsenic (As) resistance operons in Bacillus strains, isolated from As-rich hot spring microbial mats

    • Microbiological Research
    • The geothermal zone of Araró, México, is located within the trans-Mexican volcanic belt, an area with numerous arsenic (As)-rich hot springs. In this study, the draft genome sequence of two endemic Bacillus strains (ZAP17 and ZAP62) from Araró microbial mat hot springs was determined, which were able to grow on arsenate As(V) (up to 64 mM) and arsenite As(III) (up to 32 mM).

      • Chemical contaminants
      • Heavy Metals
  12. Volatiles of antagonistic soil yeasts inhibit growth and aflatoxin production of Aspergillus flavus

    • Microbiological Research
    • Minimizing Aspergillus flavus growth is an effective strategy to mitigate aflatoxin contamination in food and agricultural products. In the present investigation, we attempted to utilize soil-associated yeasts from the Western and Eastern Ghats of India against A. flavus to reduce aflatoxin contamination. Forty-five yeast isolates were screened against A. flavus using overlay and dual plate assays.

      • Natural toxins
      • Aflatoxins
      • Mycotoxins
  13. Campylobacter biofilms

    • Microbiological Research
    • Campylobacter infection is one of the most widespread foodborne gastroenteritis worldwide. As a commensal microbe in the intestinal tracts of food-producing animals, Campylobacter easily enters the food chain and eventually transmits to human hosts through the consumption of contaminated food products.

      • Bacterial pathogens
      • Campylobacter
  14. Induction of the macrolide-resistance efflux pump Mega inhibits intoxication of Staphylococcus aureus strains by Streptococcus pneumoniae

    • Microbiological Research
    • Streptococcus pneumoniae (Spn) kills Staphylococcus aureus (Sau) through a contact-dependent mechanism that is catalyzed by cations, including iron, to convert hydrogen peroxide (H2O2) to highly toxic hydroxyl radicals (•OH). There are two well-characterized ABC transporters that contribute to the pool of iron in Spn, named Pia and Piu.

      • Bacterial pathogens
      • Staphylococcus aureus
  15. Vitexin alters Staphylococcus aureus surface hydrophobicity to obstruct biofilm formation

    • Microbiological Research
    • Cell Surface hydrophobicity is one of the determinant biophysical parameters of bacterial aggregation for being networked to form a biofilm. Phytoconstituent, like vitexin, has long been in use for their antibacterial effect. The present work demonstrates the role of vitexin in modulating Staphylococcus aureus surface hydrophobicity while aggregating to form biofilm and pathogenesis in a host.

      • Bacterial pathogens
      • Staphylococcus aureus
  16. Transcriptome Profiles of Genes Related to Growth and Virulence Potential in Vibrio alginolyticus Treated with Modified Clay

    • Microbiological Research
    • Vibrio alginolyticus is a globally distributed opportunistic pathogen that causes different degrees of disease in various marine organisms, such as fish, shrimp and shellfish. At present, vibriosis caused by V. alginolyticus has a wide epidemic range and causes frequent outbreaks, resulting in substantial losses in aquaculture.

      • Bacterial pathogens
      • Vibrio
  17. Identification of Two Sel1-like Proteins in SPI-19 of Salmonella enterica Serovar Pullorum That Can Mediate Bacterial Infection Through T3SS

    • Microbiological Research
    • The type VI secretion system (T6SS) encoded by Salmonella Pathogenicity Island 19 (SPI-19) has been confirmed to be involved in bacterial infection or colonization in hosts and in the inhibition of the host T-cell immune response. However, the deletion of the core genes (clpVvgrG, and hcp2) encoding the T6SS apparatus does not affect the phenotypes caused by SPI-19-encoded T6SS.

      • Bacterial pathogens
      • Salmonella
  18. Vibrio splendidus infection induces dysbiosis in the blue mussel and favors pathobiontic bacteria

    • Microbiological Research
    • Studies on marine epizootics are often based on the identification of a single pathogen.

      • Bacterial pathogens
      • Vibrio
  19. Natural Flavone Hispidulin Protects Mice from Staphylococcus aureus Pneumonia by Inhibition of α-Hemolysin Production via Targeting AgrAC

    • Microbiological Research
    • The emergence of drug-resistant Staphylococcus aureus (S. aureus) has limited drug options for the clinical treatment of S. aureus infections. Considering recent reports, therapeutic strategies targeting bacterial virulence hold great promise, and alpha-hemolysin (encoded by hla), a critical virulence factor of S. aureus, plays a vital role during bacterial infection.

      • Bacterial pathogens
      • Staphylococcus aureus
  20. A 3-alkylpyridine-bearing alkaloid exhibits potent antimicrobial activity against methicillin-resistant Staphylococcus aureus (MRSA) with no detectable resistance

    • Microbiological Research
    • Staphylococcus aureus is a Gram-positive bacterium responsible for a wide variety of infectious diseases, and its methicillin-resistant isolates pose a serious worldwide public health risk. New drugs are urgently needed for the treatment of methicillin-resistant Staphylococcus aureus (MRSA) infections.

      • Bacterial pathogens
      • Staphylococcus aureus
  21. Efficacy and safety of phage therapy against Salmonella enterica serovars Typhimurium and Enteritidis estimated by using a battery of in vitro tests and the Galleria mellonella animal model

    • Microbiological Research
    • In light of spreading antibiotic resistance among pathogenic bacteria, the development of novel approaches to combat such microorganisms is crucial. Salmonella enterica is pathogenic to humans, however, it can also infect poultry, being a potential foodborne pathogen when poultry-derived food is contaminated by this bacterium.

      • Bacterial pathogens
      • Salmonella
  22. Staphylococcus aureus small-colony variants: Formation, infection, and treatment

    • Microbiological Research
    • Staphylococcus aureus (Sau) plays an important role in human infections occurring in both the community and hospital settings.

      • Bacterial pathogens
      • Staphylococcus aureus
  23. Dysbiosis and intestinal inflammation caused by Salmonella Typhimurium in mice can be alleviated by preadministration of a lytic phage

    • Microbiological Research
    • Many studies have shown the efficacy of phage therapy in reducing intestinal pathogens. However, phage-based probiotic treatment is poorly studied in view of effects on the gut microbiota and intestinal inflammation. In this study, a lytic or a temperate phage (each at 4×108 PFU per day) or a streptomycin solution (40 mg per day) were administered to mice via drinking water for 31 days.

      • Bacterial pathogens
      • Salmonella
  24. Impact of arsenic on phosphate solubilization, acquisition and poly-phosphate accumulation in endophytic fungus Serendipita indica

    • Microbiological Research
    • Symbiotic interactions play a crucial role in the phosphate (Pi) nutrient status of the host plant and offer resilience during biotic and abiotic stresses. Despite a competitive behavior of arsenic (AsV) with Pi, Serendipita indica association promotes plant growth by reducing arsenic bioavailability in the rhizosphere. Reduced arsenic availability is due to the adsorption, accumulation, and precipitation of arsenic in the fungus.

      • Chemical contaminants
      • Heavy Metals
  25. Fermentation products of the fungus Monascus spp. impairs the physiological activities of toxin-producing Vibrio cholerae

    • Microbiological Research
    • Monascus spp. are filamentous fungi used in fermented foods. They are also natural colorants and food preservatives. Certain metabolites of Monascus spp. lower cholesterol and have other health-promoting effects in humans. In the present study, we demonstrated that the fermentation products of Monascus spp. inhibited ATP synthesis and motility in toxigenic Vibrio cholerae.

      • Bacterial pathogens
      • Vibrio