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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 151 - 175 of 3982

  1. Serovars, Virulence and Antimicrobial Resistance Genes of Non-Typhoidal Salmonella Strains from Dairy Systems in Mexico

    • Antibiotics
    • Salmonella isolated from dairy farms has a significant effect on animal health and productivity. Different serogroups of Salmonella affect both human and bovine cattle causing illness in both reservoirs. Dairy cows and calves can be silent Salmonella shedders, increasing the possibility of dispensing Salmonella within the farm.

      • Bacterial pathogens
      • Salmonella
  2. Quantification of Salmonella Infantis transfer from transport drawer flooring to broiler chickens during holding

    • Poultry Science
    • Transportation is a potential point of cross-contamination before broiler chickens arrive at the processing plant for slaughter. Previous studies have associated the use of uncleaned transport containers with the introduction of pathogenic bacteria onto uncontaminated broilers. The objective of this study was to quantify the transfer of Salmonella from transport drawer perforated flooring to broiler chickens during different holding times.

      • Bacterial pathogens
      • Salmonella
  3. Influence of peroxyacetic acid concentration, temperature, pH, and treatment time on antimicrobial efficacy against Salmonella on chicken wings

    • Poultry Science
    • Peroxyacetic acid (PAA) is commonly used during poultry processing to reduce the prevalence of Salmonella on carcasses and parts. Wash solutions containing PAA are used at varying concentrations during processing and processors use internally validated practices that best suit the needs of the individual establishment.

      • Bacterial pathogens
      • Salmonella
  4. Protective effects of puerarin on liver tissue in Salmonella-infected chicks: a proteomic analysis

    • Poultry Science
    • Salmonella enterica is a zoonotic bacterium that not only causes serious economic losses to the livestock and poultry industries but also seriously endangers human health.

      • Bacterial pathogens
      • Salmonella
  5. Isolation and characterization of phage ISTP3 for bio-control application against drug-resistant Salmonella

    • Frontiers in Microbiology
    • Salmonella including drug-resistant strains are major foodborne pathogens causing serious illness and pose a great threat to the prevention and control for food safety. Phages can naturally defect the bacterium, is considered as a new and promising biological antimicrobial agent in the post-antibiotic era. A poultry facility in Wuhan, China provided wastewater samples from which a collection of 29 phages were isolated and purified.

      • Bacterial pathogens
      • Salmonella
  6. Whole-Genome Sequencing Analysis of Non-Typhoidal Salmonella Isolated from Breeder Poultry Farm Sources in China, 2020–2021

    • Antibiotics
    • Non-typhoidal salmonellosis is a dangerous foodborne disease that causes enormous economic loss and threatens public health worldwide. The consumption of food, especially poultry or poultry products, contaminated with non-typhoidal Salmonella (NTS) is the main cause of human salmonellosis. To date, no research has identified the molecular epidemiological characteristics of NTS strains isolated from breeder chicken farms in different provinces of China.

      • Bacterial pathogens
      • Salmonella
  7. Transcriptome and proteome profile of jejunum in chickens challenged with Salmonella Typhimurium revealed the effects of dietary bilberry anthocyanin on immune function

    • Frontiers in Microbiology
    • Introduction The present study investigated the effects of bilberry anthocyanin (BA) on immune function when alleviating Salmonella Typhimurium (S. Typhimurium) infection in chickens. Methods A total of 180 newly hatched yellow-feathered male chicks were assigned to three groups (CON, SI, and SI + BA). Birds in CON and SI were fed a basal diet, and those in SI + BA were supplemented with 100 mg/kg BA for 18 days.

      • Bacterial pathogens
      • Salmonella
  8. 103 Development of a Novel, Experimental, Minimally Invasive Model to Investigate the Genesis and Etiology of Liver Abscesses in Cattle

    • Journal of Animal Science
    • Most research surrounding liver abscesses involves post-hoc evaluation of naturally occurring abscesses in production settings. Few studies have been designed to experimentally induce abscesses with the purpose of identifying a time course, causality, and associated physiological implications.

      • Bacterial pathogens
      • Salmonella
  9. 104 Development of an Experimental Model to Induce Liver Abscesses in Steers Using an Acidotic Diet Challenge and Oral Bacterial Inoculation

    • Journal of Animal Science
    • The objective of this study was to develop a model for liver abscesses (LA) in Holstein steers by using an acidotic diet or acidotic diet plus intraruminal inoculation of Fusobacterium necrophorum, Salmonella enterica serotype Lubbock, and Truperella pyogenes.

      • Bacterial pathogens
      • Salmonella
  10. Salmonella enterica serotypes isolated for the first time in laying hens, and their susceptibility to antibiotics

    • Poultry Science
    • In this study, a total of 323 drag swab samples were taken from laying hen fresh feces from 3 different provinces (Kırklareli, Edirne, and Tekirdağ), which are located in the European part of Türkiye. According to the ISO 6579: 2002 method, 17.3% of the samples were found positive for Salmonella.

      • Bacterial pathogens
      • Salmonella
  11. Serotype distribution, antimicrobial resistance, virulence genes, and genetic diversity of Salmonella spp. isolated from the informal leafy green vegetable supply chains in South Africa

    • Journal of Food Protection
    • Salmonella have been implicated in foodborne disease outbreaks globally and is a pressing concern in the South African informal sector due to inadequate hygiene standards and limited regulatory oversight, leading to a higher risk of foodborne diseases.

      • Bacterial pathogens
      • Salmonella
  12. A machine learning approach to identifying Salmonella stress response genes in isolates from poultry processing

    • Food Research International
    • We explored the potential of machine learning to identify significant genes associated with Salmonella stress response during poultry processing using whole genome sequencing (WGS) data. The Salmonella isolates (n = 177) used in this study were obtained from various chicken sources (skin before chiller, chicken carcass before chiller, frozen chicken, and post-chill chicken carcass).

      • Bacterial pathogens
      • Salmonella
  13. In silico exploration of Serratia sp. BRL41 genome for detecting prodigiosin Biosynthetic Gene Cluster (BGC) and in vitro antimicrobial activity assessment of secreted prodigiosin

    • PLOS ONE
    • by Farhana Boby, Md. Nurul Huda Bhuiyan, Barun Kanti Saha, Subarna Sandhani Dey, Anik Kumar Saha, Md Jahidul Islam, Mahci Al Bashera, Shyama Prosad Moulick, Farhana Jahan, Md. Asad Uz Zaman, Sanjana Fatema Chowdhury, Showti Raheel Naser, Md. Salim Khan, Md. Murshed Hasan Sarkar The raising concern of drug resistance, having substantial impacts on public health, has instigated the search of new natural compounds with substantial medicinal activity.

      • Bacterial pathogens
      • Salmonella
      • Staphylococcus aureus
  14. Egg-associated Salmonella enterica serovar Enteritidis: comparative genomics unveils phylogenetic links, virulence potential, and antimicrobial resistance traits

    • Frontiers in Microbiology
    • Salmonella enterica serovar Enteritidis (SE) remains a frequent cause of foodborne illnesses associated with the consumption of contaminated hen eggs. Such a food–pathogen association has been demonstrated epidemiologically, but the molecular basis for this association has not been explored. Comparative genomic analysis was implemented to decipher the phylogenomic characteristics, antimicrobial resistance, and virulence potential of eggs-associated SE.

      • Bacterial pathogens
      • Salmonella
  15. Control of Salmonella in wheat grains with sodium bisulfate (SBS) tempering and its impact on flour quality

    • Cereal Chemistry
    • AbstractBackground and ObjectivesIn the last decade, the incidence of foodborne illness outbreaks and recalls connected with wheat flour and flour‐based goods infected with enteric bacteria such as Salmonella has grown. This study investigated the activity of sodium bisulfate (SBS) as an antibacterial agent against four different serovars of Salmonella enterica.FindingsThe dose‐dependent, anti‐Salmonella concentration of SBS revealed a minimum inhibitory activity (MIC) of 0.32%.

      • Bacterial pathogens
      • Salmonella
  16. Identification of virulence factors and antibiotic resistance in Salmonella enterica subsp. enterica serovar Javiana (FARPER-220) isolated from broiler chickens

    • Microbiology Resource Announcements
    • Microbiology Resource Announcements, Ahead of Print. Genome sequencing of highly virulent Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 (ST-1674) isolated from broiler chickens in Peru revealed multiple virulence factors, antibiotic resistance genes, and invasion-related subcategories. The results provide insights into the potential importance of this strain in causing infections in various animals.

      • Bacterial pathogens
      • Salmonella
  17. 221 Increasing Functional Amino Acid Ratios Does Not Improve Growth Performance in Pigs Raised Under Poor Sanitary Conditions When Fed with Individual Precision Feeding Or Conventional Feeding Systems

    • Journal of Animal Science
    • Immune system activation redirects dietary nutrients to defense mechanisms, thereby impairing growth performance of pigs. Supplementing pigs with functional amino acids (AA) such as Met, Thr and Trp was shown to support the immune system and reduce the negative effects on growth. However, pigs respond differently to immune stressors which increase herd variability.

      • Bacterial pathogens
      • Salmonella
  18. Early Salmonella Typhimurium inoculation may obscure anti-interleukin-10 protective effects on broiler performance during coccidiosis and necrotic enteritis challenge

    • Poultry Science
    • Anti-interleukin (IL)-10 may preserve broiler performance during coccidiosis by diminishing Eimeria spp. host-evasion but has not been evaluated during secondary Clostridium perfringens challenge (necrotic enteritis). Early Salmonella Typhimurium inoculation is implemented in some models to improve repeatability—a potential confounder due to Salmonella using similar IL-10 host evasion pathways.

      • Bacterial pathogens
      • Salmonella
  19. Prevalence and molecular characterization of Salmonella isolated from wild birds in fresh produce environments

    • Frontiers in Microbiology
    • Wild birds pose a difficult food safety risk to manage because they can avoid traditional wildlife mitigation strategies, such as fences. Birds often use agricultural fields and structures as foraging and nesting areas, which can lead to defecation on crops and subsequent transfer of foodborne pathogens.

      • Bacterial pathogens
      • Salmonella
      • Produce Safety
      • Post Harvest
      • Pre Harvest
  20. PSXIV-27 Liver Abscesses in Feedlot Cattle: Further Studies on Etiology and Pathogenesis Liver Abscesses in Feedlot Cattle: Further Studies on Etiology and Pathogenesis

    • Journal of Animal Science
    • Liver abscesses (LA) are a polymicrobial infection and the causative agents include two subspecies of Fusobacterium necrophorum, necrophorum and funduliforme, and Trueperella pyogenes. Nucleic acid-based analysis of the purulent material of LA has indicated that Proteobacteria and Bacteroidetes were the dominant phyla, next to phylum Fusobacteria. The sporadic isolations of bacterial species of the Proteobacteria and Bacteroidetes in LA have been reported.

      • Bacterial pathogens
      • Salmonella
  21. PSXI-22 Different Initial Body Weight and Dietary Supplementation of Tryptophan, Threonine, and Methionine on Feeding Behavior Index of Growing Pigs Under a Sanitary Challenge

    • Journal of Animal Science
    • Sanitary challenges (SC) can affect growth and revenue of pig production. The reduction in growth performance result from a decrease in daily feed intake (DFI). Besides, feeding behavior patterns may be also affected for pigs under SC. The extent of this impact might depend on the initial body weight (BW) of pigs. Additionally, supplementing tryptophan (Trp), threonine (Thr), and methionine (Met) above NRC requirements may attenuate inflammation and modulates DFI under SC.

      • Bacterial pathogens
      • Salmonella
  22. Innovative Combined Technology with Encapsulated EVOO and Infrared Processing Against Salmonella and Listeria monocytogenes in Breaded Poultry Products

    • Food and Bioprocess Technology
    • The high Salmonella and Listeria monocytogenes risk in poultry products reinforces the urgent need for new technologies with high antimicrobial effects. In that sense, a combined technology consisting of encapsulated extra virgin olive oil (EVOO) during chicken nugget breading combined with infrared processing was hereby studied at three levels (experiments). The high in vitro EVOO antimicrobial activity (up to 74%), which was 1.2-fold higher against L.

      • Bacterial pathogens
      • Listeria monocytogenes
      • Salmonella
  23. Microbiological hazards associated with the use of water in the post‐harvest handling and processing operations of fresh and frozen fruits, vegetables and herbs (ffFVHs). Part 1 (outbreak data analysis, literature review and stakeholder questionnaire)

    • EFSA Journal
    • Abstract The contamination of water used in post‐harvest handling and processing operations of fresh and frozen fruit, vegetables and herbs (ffFVHs) is a global concern. The most relevant microbial hazards associated with this water are: Listeria monocytogenes, Salmonella spp., human pathogenic Escherichia coli and enteric viruses, which have been linked to multiple outbreaks associated with ffFVHs in the European Union (EU). Contamination (i.e.

      • Bacterial pathogens
      • Listeria monocytogenes
      • Salmonella
  24. Prevalence, antibiotic resistance, virulence genes and molecular characteristics of Salmonella isolated from ducks and wild geese in China

    • Food Microbiology
    • Salmonella is a major foodborne pathogen and the cause of significant morbidity and mortality via consumption of contaminated meat and meat-products. The prevalence of Salmonella in ducks and wild geese in China are poorly characterized and these sources represent a potential pool that could be transferred to farm-reared fowl.

      • Bacterial pathogens
      • Salmonella
  25. Inactivation of Salmonella Enteritidis on hatchery and table eggs using a gas phase-hydroxyl radical process

    • Journal of Food Protection
    • Eggs represent a significant vehicle for Salmonella Enteritidis with the pathogen being transferred to chicks in the hatchery, or to consumers via table eggs. In the following, the efficacy of a gas phase hydroxyl-radical process for decontaminating hatchery and table eggs was evaluated. Recovery of Salmonella was maximized through holding eggs in tryptic soy broth containing 20% w/v glycerol for 1 h prior to plating.

      • Bacterial pathogens
      • Salmonella