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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1 - 25 of 211

  1. Antibiotics Limit Adaptation of Drug-Resistant Staphylococcus aureus to Hypoxia

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Ahead of Print. Bacterial pathogens are confronted with a range of challenges at the site of infection, including exposure to antibiotic treatment and harsh physiological conditions, that can alter the fitness benefits and costs of acquiring antibiotic resistance.

      • Bacterial pathogens
      • Staphylococcus aureus
  2. Rapid Bactericidal Activity of SC5005 Combined with Docosahexaenoic Acid against Multidrug-Resistant Staphylococcus aureus Persisters and Biofilms

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Ahead of Print. Staphylococcus aureus can form persister cells and biofilms, making the treatment difficult and often leading to recurrent infections. In an effort to discover new anti-staphylococcal agents, we observed that oleic acid enhances the activity of a new antibacterial agent, SC5005, against S. aureus and MRSA strains.

      • Bacterial pathogens
      • Staphylococcus aureus
  3. Molecular Characterization of Clinical Rel Mutations and Consequences for Resistance Expression and Fitness in Staphylococcus aureus

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Ahead of Print. The stringent response (SR) is a universal stress response that acts as a global regulator of bacterial physiology and virulence, and is a contributor to antibiotic tolerance and resistance. In most bacteria, the SR is controlled by a bifunctional enzyme, Rel, which both synthesizes and hydrolyzes the alarmone (p)ppGpp via two distinct catalytic domains.

      • Bacterial pathogens
      • Staphylococcus aureus
  4. Polyimidazolium Protects against an Invasive Clinical Isolate of Salmonella Typhimurium

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Ahead of Print. Frequent outbreaks of Salmonella Typhimurium infection, in both animal and human populations and with the potential for zoonotic transmission, pose a significant threat to the public health sector. The rapid emergence and spread of more invasive multidrug-resistant clinical isolates of Salmonella further highlight the need for the development of new drugs with effective broad-spectrum bactericidal activities.

      • Bacterial pathogens
      • Salmonella
  5. An lnu(A)-Carrying Multi-Resistance Plasmid Derived from Sequence Type 3 Methicillin-Resistant Staphylococcus lugdunensis May Contribute to Antimicrobial Resistance in Staphylococci

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Ahead of Print. Methicillin-resistant Staphylococcus lugdunensis (MRSL) strains showing resistance to several common antibiotics have been reported recently. Sequence type (ST) 3 MRSL carrying SCCmec types IV, V, or Vt is the major lineage associated with health care-associated infections. We aimed to investigate the distribution and dissemination of antimicrobial resistance determinants in this lineage.

      • Bacterial pathogens
      • Staphylococcus aureus
  6. Hinokiflavone Attenuates the Virulence of Methicillin-Resistant Staphylococcus aureus by Targeting Caseinolytic Protease P

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Ahead of Print. Drug-resistant bacteria was the third leading cause of death worldwide in 2019, which sounds like a cautionary note for global public health. Therefore, developing novel strategies to combat Methicillin-resistant Staphylococcus aureus (MRSA) infections is the need of the hour.

      • Bacterial pathogens
      • Staphylococcus aureus
  7. Activity of Exebacase (CF-301) against Biofilms Formed by Staphylococcus epidermidis Strains Isolated from Prosthetic Joint Infections

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Ahead of Print. Staphylococcus epidermidis is one of the main pathogens responsible for bone and joint infections, especially those involving prosthetic materials, due to its ability to form biofilms. In these cases, biofilm formation, combined with increased antimicrobial resistance, often results in therapeutic failures. In this context, the development of innovative therapies active against S. epidermidis is a priority.

      • Bacterial pathogens
      • Staphylococcus aureus
  8. Characterization of Extended-Spectrum β-Lactamase-Producing Shigella sonnei in Spain: Expanding the Geographic Distribution of Sequence Type 152/CTX-M-27 Clone

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Ahead of Print. We describe the first occurrence in Spain of community cases of CTX-M-27-producing Shigella sonnei sequence type 152 (ST152), resistant to quinolones and azithromycin. The cases included adult males and also one pediatric case. The isolates were clustered together with an Australian isolate and differed from other outbreak-causing strains in England by more than 50 alleles.

      • Bacterial pathogens
      • Shigella
  9. Risk Factors of Recurrent Infection in Patients with Staphylococcus aureus Bacteremia: a Competing Risk Analysis

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Ahead of Print. Although several clinical variables have been reported as risk factors for recurrence of Staphylococcus aureus infection, most studies have not considered competing risk events that may overestimate the risk. In this study, we performed competing risk analysis to identify risk factors related to 90-day recurrence in patients with S.

      • Bacterial pathogens
      • Staphylococcus aureus
  10. Therapeutic Inhibition of Staphylococcus aureus ArlRS Two-Component Regulatory System Blocks Virulence

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Ahead of Print. Staphylococcus aureus is a common cause of severe infections, and its widespread antibiotic resistance necessitates search for alternative therapies, such as inhibition of virulence. As S. aureus produces multiple individual virulence factors, inhibition of an entire regulatory system might provide better effects than targeting each virulence factor separately. Herein, we describe two novel inhibitors of S.

      • Bacterial pathogens
      • Staphylococcus aureus
  11. Functional Role of YnfA, an Efflux Transporter in Resistance to Antimicrobial Agents in Shigella flexneri

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Ahead of Print.

      • Bacterial pathogens
      • Shigella
  12. Antibiotic Exposure Leads to Reduced Phage Susceptibility in Vancomycin Intermediate Staphylococcus aureus (VISA)

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Ahead of Print. In the time of antimicrobial resistance, phage therapy is frequently suggested as a possible solution for such difficult-to-treat infections. Vancomycin-intermediate Staphylococcus aureus (VISA) remains a relatively rare yet increasing occurrence in the clinic for which phage therapy may be an option.

      • Bacterial pathogens
      • Staphylococcus aureus
  13. Repurposing the Kinase Inhibitor Mavelertinib for Giardiasis Therapy

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Ahead of Print. A phenotypic screen of the ReFRAME compound library was performed to identify cell-active inhibitors that could be developed as therapeutics for giardiasis. A primary screen against Giardia lamblia GS clone H7 identified 85 cell-active compounds at a hit rate of 0.72%. A cytotoxicity counterscreen against HEK293T cells was carried out to assess hit compound selectivity for further prioritization.

      • Parasites
      • Giardia lamblia
  14. Salmonella Central Carbon Metabolism Enhances Bactericidal Killing by Fluoroquinolone Antibiotics

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Ahead of Print. The efficacy of killing by bactericidal antibiotics has been reported to depend in large part on the ATP levels, with low levels of ATP leading to increased persistence after antibiotic challenge.

      • Bacterial pathogens
      • Salmonella
  15. Impact of Clopidogrel on Clinical Outcomes in Patients with Staphylococcus aureus Bacteremia: a National Retrospective Cohort Study

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Ahead of Print. Activated platelets have known antimicrobial activity against Staphylococcus aureus. Accelerated clearance of platelets induced by S. aureus can result in thrombocytopenia and increased mortality in patients. Recent studies suggest that P2Y12 inhibition protects platelets from accelerated clearance. We therefore evaluated the effect of P2Y12 inhibition on clinical outcomes in patients with S.

      • Bacterial pathogens
      • Staphylococcus aureus
  16. Punicalagin, an Inhibitor of Sortase A, Is a Promising Therapeutic Drug to Combat Methicillin-Resistant Staphylococcus aureus Infections

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Ahead of Print. Antimicrobial resistance (AMR) poses a major threat to human health globally. Staphylococcus aureus is recognized as a cause of disease worldwide, especially methicillin-resistant S. aureus (MRSA) and vancomycin-resistant S. aureus (VRSA). The enzyme sortase A (SrtA), present on the cell surface of S.

      • Bacterial pathogens
      • Staphylococcus aureus
  17. Novel Neplanocin A Derivatives as Selective Inhibitors of Hepatitis B Virus with a Unique Mechanism of Action

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Ahead of Print. Novel neplanocin A derivatives have been identified as potent and selective inhibitors of hepatitis B virus (HBV) replication in vitro. These include (1S,2R,5R)-5-(5-bromo-4-methyl-7H-pyrrolo[2,3-d]-pyrimidin-7-yl)-3-(hydroxymethyl)cyclopent-3-ene-1,2-diol (AR-II-04-26) and (1S,2R,5R)-5-(4-amino-3-iodo-1H-pyrazolo[3,4-d]pyrimidin-1-yl)-3-(hydroxylmethyl)cyclopent-3-ene-1,2-diol (MK-III-02-03).

      • Viruses
      • Hepatitis
  18. The NaHCO3-Responsive Phenotype in Methicillin-Resistant Staphylococcus aureus (MRSA) Is Influenced by mecA Genotype

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Ahead of Print. Methicillin-resistant Staphylococcus aureus (MRSA) strains are a leading cause of many invasive clinical syndromes, and pose treatment difficulties due to their in vitro resistance to most β-lactams on standard laboratory testing.

      • Bacterial pathogens
      • Staphylococcus aureus
  19. Linker-Improved Chimeric Endolysin Selectively Kills Staphylococcus aureus In Vitro, on Reconstituted Human Epidermis, and in a Murine Model of Skin Infection

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Volume 66, Issue 5, May 2022. Staphylococcus aureus causes a broad spectrum of diseases in humans and animals. It is frequently associated with inflammatory skin disorders such as atopic dermatitis, where it aggravates symptoms. Treatment of S. aureus-associated skin infections with antibiotics is discouraged due to their broad-range deleterious effect on healthy skin microbiota and their ability to promote the development of resistance.

      • Bacterial pathogens
      • Staphylococcus aureus
  20. Genomic Screening of Antimicrobial Resistance Markers in UK and US Campylobacter Isolates Highlights Stability of Resistance over an 18-Year Period

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Volume 66, Issue 5, May 2022. Campylobacter jejuni and Campylobacter coli are important bacterial causes of human foodborne illness. Despite several years of reduced antibiotics usage in livestock production in the United Kingdom (UK) and United States (US), a high prevalence of antimicrobial resistance (AMR) persists in Campylobacter.

      • Bacterial pathogens
      • Campylobacter
  21. Safety, Tolerability, and Pharmacokinetics of the Novel Hepatitis B Virus Expression Inhibitor GST-HG131 in Healthy Chinese Subjects: a First-in-Human Single- and Multiple-Dose Escalation Trial

    • Antimicrobial Agents and Chemotherapy
    • Antimicrobial Agents and Chemotherapy, Volume 66, Issue 5, May 2022. GST-HG131, a novel dihydroquinolizinone (DHQ) compound, has been shown to reduce circulating levels of HBsAg in animals. This first-in-human trial evaluated the safety, tolerability, and pharmacokinetic profile of GST-HG131 in healthy Chinese subjects. This was a double-blind, randomized, placebo-controlled phase Ia clinical trial that was conducted in two parts.

      • Viruses
      • Hepatitis
  22. Antioxidant Molecules as a Source of Mitigation of Antibiotic Resistance Gene Dissemination

    • Antimicrobial Agents and Chemotherapy
    • Escherichia coli is the most commonly identified human pathogen and a prominent microorganism of the gut microbiota. Acquired resistance to antibiotics in this species is driven mainly by horizontal gene transfer and plasmid acquisition. Currently, the main concern is the acquisition of extended-spectrum β-lactamases of the CTX-M type in E. coli, a worldwide-observed phenomenon. Plasmids encoding CTX-M enzymes have different scaffolds and conjugate at different frequencies.

      • Bacterial pathogens
      • Chemical contaminants
  23. In Vitro Susceptibility of Kinetoplastids to Celastroloids from Maytenus chiapensis

    • Antimicrobial Agents and Chemotherapy
    • Leishmaniasis and Chagas are among the most significant neglected tropical diseases. Due to several drawbacks with the current chemotherapy, developing new antikinetoplastid drugs has become an urgent issue.

      • Heavy Metals
      • Chemical contaminants
  24. Thin-Layer-Agar-Based Direct Phenotypic Drug Susceptibility Testing on Sputum in Eswatini Rapidly Detects Mycobacterium tuberculosis Growth and Rifampicin Resistance Otherwise Missed by WHO-Endorsed Diagnostic Tests

    • Antimicrobial Agents and Chemotherapy
    • Xpert MTB/RIF rapidly detects resistance to rifampicin (RR); however, this test misses I491F-RR conferring rpoB mutation, common in southern Africa. In addition, Xpert MTB/RIF does not distinguish between viable and dead Mycobacterium tuberculosis (MTB). We aimed to investigate the ability of thin-layer agar (TLA) direct drug-susceptibility testing (DST) to detect MTB and its drug-resistance profiles in field conditions in Eswatini.

      • Bacterial pathogens
  25. Analyzing Possible Native Functions of the Quinolone Resistance Gene qnr in Vibrio vulnificus

    • Antimicrobial Agents and Chemotherapy
    • The worldwide distribution of qnr genes found on plasmids and their presence on the chromosomes of aquatic bacteria, such as Vibrio vulnificus, one of the suspected sources, suggests an origin before the development of synthetic quinolones. However, their native function remains unknown. Previous work indicated that expression of qnrVv in V. vulnificus was induced by cold shock.

      • Vibrio
      • Bacterial pathogens