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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1 - 24 of 24

  1. Gut bacterial consortium enriched in a biofloc system protects shrimp against Vibrio parahaemolyticus infection

    • Microbiome
    • Background Shrimp cultured in a biofloc system (BFS) have a lower disease incidence than those farmed in a water exchange system (WES). Although a number of studies have reported that the gut bacterial community induced by BFS is highly associated with shrimp disease resistance, the causal relationship remains unknown.

      • Bacterial pathogens
      • Vibrio
  2. The composition of environmental microbiota in three tree fruit packing facilities changed over seasons and contained taxa indicative of L. monocytogenes contamination

    • Microbiome
    • Background Listeria monocytogenes can survive in cold and wet environments, such as tree fruit packing facilities and it has been implicated in outbreaks and recalls of tree fruit products. However, little is known about microbiota that co-occurs with L. monocytogenes and its stability over seasons in tree fruit packing environments.

      • Bacterial pathogens
      • Listeria monocytogenes
  3. Zearalenone disturbs the reproductive-immune axis in pigs: the role of gut microbial metabolites

    • Microbiome
    • Background Exposure to zearalenone (ZEN, a widespread Fusarium mycotoxin) causes reproductive toxicity and immunotoxicity in farm animals, and it then poses potential threats to human health through the food chain. A systematic understanding of underlying mechanisms on mycotoxin-induced toxicity is necessary for overcoming potential threats to farm animals and humans.

      • Natural toxins
      • Mycotoxins
  4. Taurine metabolism is modulated in Vibrio-infected Penaeus vannamei to shape shrimp antibacterial response and survival

    • Microbiome
    • Numerous microorganisms are found in aquaculture ponds, including several pathogenic bacteria. Infection of cultured animals by these pathogens results in diseases and metabolic dysregulation. However, changes...

      • Bacterial pathogens
      • Vibrio
  5. Community structure of coral microbiomes is dependent on host morphology

    • Microbiome
    • Background The importance of symbiosis has long been recognized on coral reefs, where the photosynthetic dinoflagellates of corals (Symbiodiniaceae) are the primary symbiont. Numerous studies have now shown that a diverse assemblage of prokaryotes also make-up part of the microbiome of corals.

      • Natural toxins
      • Shellfish toxins
  6. Microbial colonization and resistome dynamics in food processing environments of a newly opened pork cutting industry during 1.5 years of activity

    • Microbiome
    • Background

  7. Longitudinal study on the effects of growth-promoting and therapeutic antibiotics on the dynamics of chicken cloacal and litter microbiomes and resistomes

    • Microbiome
    • Abstract
      Background

  8. Vibrio vulnificus induces the death of a major bacterial species in the mouse gut via cyclo-Phe-Pro

    • Microbiome
    • Abstract
      Background

      • Vibrio
      • Bacterial pathogens
  9. Revealing taxon-specific heavy metal-resistance mechanisms in denitrifying phosphorus removal sludge using genome-centric metaproteomics

    • Microbiome
    • Denitrifying phosphorus removal sludge (DPRS) is widely adopted for nitrogen and phosphorus removal in wastewater treatment but faces threats from heavy metals. However, a lack of understanding of the taxon-specific heavy metal-resistance mechanisms hinders the targeted optimization of DPRS’s robustness in nutrient removal.

  10. Antimicrobial use and production system shape the fecal, environmental, and slurry resistomes of pig farms

    • Microbiome
    • Background

  11. Changes of the human skin microbiota upon chronic exposure to polycyclic aromatic hydrocarbon pollutants

    • Microbiome
    • Polycyclic aromatic hydrocarbons (PAHs) are of environmental and public health concerns and contribute to adverse skin attributes such as premature skin aging and pigmentary disorder. However, little informati...

      • Chemical contaminants
  12. Reservoirs of antimicrobial resistance genes in retail raw milk

    • Microbiome
    • Background

  13. Ochratoxin A induces liver inflammation: involvement of intestinal microbiota

    • Microbiome
    • Ochratoxin A (OTA) is a widespread mycotoxin and induces liver inflammation to human and various species of animals. The intestinal microbiota has critical importance in liver inflammation; however, it remains...

      • Mycotoxins
      • Natural toxins
  14. Correction to: The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle

    • Microbiome
    • Following publication of the original article [1], the authors reported an error in the Additional file 1.

  15. Commensal-derived metabolites govern Vibrio cholerae pathogenesis in host intestine

    • Microbiome
    • Background
      Recent evidence suggests that the commensal microbes act as a barrier against invading pathogens and enteric infections are the consequences of multi-layered interactions among commensals, pathogens, and the host intestinal tissue. However, it remains unclear how perturbations of the gut microbiota compromise host infection resistance, especially through changes at species and metabolite levels.

      • Vibrio
      • Bacterial pathogens
  16. The occurrence of Listeria monocytogenes is associated with built environment microbiota in three tree fruit processing facilities

    • Microbiome
    • Background

      • Listeria monocytogenes
      • Bacterial pathogens
  17. Correction to: Metagenomic analysis of isolation methods of a targeted microbe, Campylobacter jejuni, from chicken feces with high microbial contamination

    • Microbiome
    • Following publication of the original article [1], the authors reported an error in Fig. 2. The correct figure is shown below.

      • Campylobacter
      • Bacterial pathogens
  18. Metagenomic analysis of isolation methods of a targeted microbe, Campylobacter jejuni, from chicken feces with high microbial contamination

    • Microbiome
    • Background

      • Bacterial pathogens
      • Campylobacter
  19. Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

    • Microbiome
    • Background

      • Bacterial pathogens
  20. An integrated meta-omics approach reveals substrates involved in synergistic interactions in a bisphenol A (BPA)-degrading microbial community

    • Microbiome
    • Background

      • Chemical contaminants
  21. Short-term consumption of a high-fat diet increases host susceptibility to Listeria monocytogenes infection

    • Microbiome
    • Background
      A westernized diet comprising a high caloric intake from animal fats is known to influence the development of pathological inflammatory conditions. However, there has been relatively little focus upon the implications of such diets for the progression of infectious disease. Here, we investigated the influence of a high-fat (HF) diet upon parameters that influence Listeria monocytogenes infection in mice.

      • Listeria monocytogenes
      • Bacterial pathogens
  22. The effect of the timing of exposure to Campylobacter jejuni on the gut microbiome and inflammatory responses of broiler chickens

    • Microbiome
    • Background
      Campylobacters are an unwelcome member of the poultry gut microbiota in terms of food safety. The objective of this study was to compare the microbiota, inflammatory responses, and zootechnical parameters of broiler chickens not exposed to Campylobacter jejuni with those exposed either early at 6 days old or at the age commercial broiler chicken flocks are frequently observed to become colonized at 20 days old.

      • Campylobacter
      • Bacterial pathogens
  23. The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle

    • Microbiome
    • Background

  24. Transplanted human fecal microbiota enhanced Guillain Barré syndrome autoantibody responses after Campylobacter jejuni infection in C57BL/6 mice

    • Microbiome
    • Background

      • Campylobacter
      • Bacterial pathogens