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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1 - 25 of 379

  1. Pyrrole-based inhibitors of RND-type efflux pumps reverse antibiotic resistance and display anti-virulence potential

    • PLOS Pathogens
    • by Nisha Mahey, Rushikesh Tambat, Ritu Kalia, Rajnita Ingavale, Akriti Kodesia, Nishtha Chandal, Srajan Kapoor, Dipesh Kumar Verma, Krishan Gopal Thakur, Sanjay Jachak, Hemraj Nandanwar

      • Chemical contaminants
      • Heavy Metals
  2. The read-through transcription-mediated autoactivation circuit for virulence regulator expression drives robust type III secretion system 2 expression in Vibrio parahaemolyticus

    • PLOS Pathogens
    • by Dhira Saraswati Anggramukti, Eiji Ishii, Andre Pratama, Mohamad Al Kadi, Tetsuya Iida, Toshio Kodama, Shigeaki Matsuda Vibrio parahaemolyticus is the leading cause of seafood-borne gastroenteritis in humans worldwide. The major virulence factor responsible for the enteropathogenicity of this pathogen is type III secretion system 2 (T3SS2), which is encoded on the 80-kb V.

      • Bacterial pathogens
      • Vibrio
  3. Establishment of a lethal mouse model of emerging tick-borne orthonairovirus infections

    • PLOS Pathogens
    • by Takuma Ariizumi, Koshiro Tabata, Yukari Itakura, Hiroko Kobayashi, William W. Hall, Michihito Sasaki, Hirofumi Sawa, Keita Matsuno, Yasuko Orba

      • Viruses
      • Hepatitis
  4. Genomic and virulence analysis of in vitro cultured Cryptosporidium parvum

    • PLOS Pathogens
    • by Nigel Yarlett, Mary Morada, Deborah A. Schaefer, Kevin Ackman, Elizabeth Carranza, Rodrigo de Paula Baptista, Michael W. Riggs, Jessica Kissinger Recent advances in the in vitro cultivation of Cryptosporidium parvum using hollow fiber bioreactor technology (HFB) have permitted continuous growth of parasites that complete all life cycle stages.

      • Parasites
      • Cryptosporidium parvum
  5. The role of species ecology in predicting Toxoplasma gondii prevalence in wild and domesticated mammals globally

    • PLOS Pathogens
    • by Amy G. Wilson, David R. Lapen, Jennifer F. Provencher, Scott Wilson Macroecological approaches can provide valuable insight into the epidemiology of globally distributed, multi-host pathogens. Toxoplasma gondii is a protozoan that infects any warm-blooded animal, including humans, in almost every habitat worldwide.

      • Parasites
      • Toxoplasma gondii
  6. Hexadecanamide alleviates Staphylococcus aureus-induced mastitis in mice by inhibiting inflammatory responses and restoring blood-milk barrier integrity

    • PLOS Pathogens
    • by Lijuan Bao, Hao Sun, Yihong Zhao, Lianjun Feng, Keyi Wu, Shan Shang, Jiawen Xu, Ruping Shan, Shiyu Duan, Min Qiu, Naisheng Zhang, Xiaoyu Hu, Caijun Zhao, Yunhe Fu Subacute ruminal acidosis (SARA) has been demonstrated to promote the development of mastitis, one of the most serious diseases in dairy farming worldwide, but the underlying mechanism is unclearn.

      • Bacterial pathogens
      • Staphylococcus aureus
  7. Thrombin cleavage of the hepatitis E virus polyprotein at multiple conserved locations is required for genome replication

    • PLOS Pathogens
    • by Danielle M. Pierce, Frazer J. T. Buchanan, Fraser L. Macrae, Jake T. Mills, Abigail Cox, Khadijah M. Abualsaoud, Joseph C. Ward, Robert A. S. Ariëns, Mark Harris, Nicola J. Stonehouse, Morgan R. Herod The genomes of positive-sense RNA viruses encode polyproteins that are essential for mediating viral replication. These viral polyproteins must undergo proteolysis (also termed polyprotein processing) to generate functional protein units.

      • Viruses
      • Hepatitis
  8. The host phylogeny determines viral infectivity and replication across Staphylococcus host species

    • PLOS Pathogens
    • by Sarah K. Walsh, Ryan M. Imrie, Marta Matuszewska, Gavin K. Paterson, Lucy A. Weinert, Jarrod D. Hadfield, Angus Buckling, Ben Longdon Virus host shifts, where a virus transmits to and infects a novel host species, are a major source of emerging infectious disease.

      • Bacterial pathogens
      • Staphylococcus aureus
  9. Scalable cryopreservation of infectious Cryptosporidium hominis oocysts by vitrification

    • PLOS Pathogens
    • by Justyna J. Jaskiewicz, Denise Ann E. Dayao, Donald Girouard, Derin Sevenler, Giovanni Widmer, Mehmet Toner, Saul Tzipori, Rebecca D. Sandlin Cryptosporidium hominis is a serious cause of childhood diarrhea in developing countries. The development of therapeutics is impeded by major technical roadblocks including lack of cryopreservation and simple culturing methods.

      • Parasites
      • Cryptosporidium parvum
  10. Novel viruses of the family Partitiviridae discovered in Saccharomyces cerevisiae

    • PLOS Pathogens
    • by Nathan T. Taggart, Angela M. Crabtree, Jack W. Creagh, Rodolfo Bizarria Jr., Shunji Li, Ignacio de la Higuera, Jonathan E. Barnes, Mason A. Shipley, Josephine M. Boyer, Kenneth M. Stedman, F. Marty Ytreberg, Paul A. Rowley It has been 49 years since the last discovery of a new virus family in the model yeast Saccharomyces cerevisiae. A large-scale screen to determine the diversity of double-stranded RNA (dsRNA) viruses in S.

      • Parasites
      • Cryptosporidium parvum
  11. A bacterial binary toxin system that kills both insects and aquatic crustaceans: Photorhabdus insect-related toxins A and B

    • PLOS Pathogens
    • by Hao-Ching Wang, Shin-Jen Lin, Han-Ching Wang, Ramya Kumar, Phuoc Thien Le, Jiann-Horng Leu Photorhabdus insect-related toxins A and B (PirA and PirB) were first recognized as insecticidal toxins from Photorhabdus luminescens. However, subsequent studies showed that their homologs from Vibrio parahaemolyticus also play critical roles in the pathogenesis of acute hepatopancreatic necrosis disease (AHPND) in shrimps.

      • Bacterial pathogens
      • Vibrio
  12. Chitinase A, a tightly regulated virulence factor of Salmonella enterica serovar Typhimurium, is actively secreted by a Type 10 Secretion System

    • PLOS Pathogens
    • by Lena Krone, Larissa Faass, Martina Hauke, Christine Josenhans, Tobias Geiger As a facultative intracellular pathogen, Salmonella enterica serovar Typhimurium is one of the leading causes of food-borne diseases in humans. With the ingestion of fecal contaminated food or water, S. Typhimurium reaches the intestine. Here, the pathogen efficiently invades intestinal epithelial cells of the mucosal epithelium by the use of multiple virulence factors.

      • Bacterial pathogens
      • Salmonella
  13. The claudin-like apicomplexan microneme protein is required for gliding motility and infectivity of Plasmodium sporozoites

    • PLOS Pathogens
    • by Manon Loubens, Carine Marinach, Clara-Eva Paquereau, Soumia Hamada, Bénédicte Hoareau-Coudert, David Akbar, Jean-François Franetich, Olivier Silvie Invasion of host cells by apicomplexan parasites such as Toxoplasma and Plasmodium spp requires the sequential secretion of the parasite apical organelles, the micronemes and the rhoptries.

      • Parasites
      • Toxoplasma gondii
  14. A new family of glutamate-gated chloride channels in parasitic sea louse Caligus rogercresseyi: A subunit refractory to activation by ivermectin is dominant in heteromeric assemblies

    • PLOS Pathogens
    • by Felipe Tribiños, Patricio Cuevas, Isabel Cornejo, Francisco V. Sepúlveda, L. Pablo Cid Sea louse ectoparasitosis is a major threat to fish aquaculture. Avermectins such as ivermectin and emamectin have been effectively used against sea louse infestation, but the emergence of resistance has limited their use. A better understanding of the molecular targets of avermectins is essential to the development of novel treatment strategies or new, more effective drugs.

      • Chemical contaminants
      • Antibiotic residues
  15. Molecular evidence of widespread benzimidazole drug resistance in Ancylostoma caninum from domestic dogs throughout the USA and discovery of a novel β-tubulin benzimidazole resistance mutation

    • PLOS Pathogens
    • by Abhinaya Venkatesan, Pablo D. Jimenez Castro, Arianna Morosetti, Hannah Horvath, Rebecca Chen, Elizabeth Redman, Kayla Dunn, James Bryant Collins, James S. Fraser, Erik C. Anderson, Ray M. Kaplan, John S. Gilleard Ancylostoma caninum is an important zoonotic gastrointestinal nematode of dogs worldwide and a close relative of human hookworms. We recently reported that racing greyhound dogs in the USA are infected with A.

      • Chemical contaminants
      • Antibiotic residues
  16. Listeria motility increases the efficiency of epithelial invasion during intestinal infection

    • PLOS Pathogens
    • by Inge M. N. Wortel, Seonyoung Kim, Annie Y. Liu, Enid C. Ibarra, Mark J. Miller Listeria monocytogenes (Lm) is a food-borne pathogen that causes severe bacterial gastroenteritis, with high rates of hospitalization and mortality. Lm is ubiquitous in soil, water and livestock, and can survive and proliferate at low temperatures.

      • Bacterial pathogens
      • Listeria monocytogenes
  17. Dissecting the invasion of Galleria mellonella by Yersinia enterocolitica reveals metabolic adaptations and a role of a phage lysis cassette in insect killing

    • PLOS Pathogens
    • by Philipp-Albert Sänger, Stefanie Wagner, Elisabeth Liebler-Tenorio, Thilo M. Fuchs The human pathogen Yersinia enterocolitica strain W22703 is characterized by its toxicity towards invertebrates that requires the insecticidal toxin complex (Tc) proteins encoded by the pathogenicity island Tc-PAIYe. Molecular and pathophysiological details of insect larvae infection and killing by this pathogen, however, have not been dissected.

      • Bacterial pathogens
      • Yersinia
  18. Polar localization of CheO under hypoxia promotes Campylobacter jejuni chemotactic behavior within host

    • PLOS Pathogens
    • by Ran Mo, Wenhui Ma, Weijie Zhou, Beile Gao Campylobacter jejuni is a food-borne zoonotic pathogen of worldwide concern and the leading cause of bacterial diarrheal disease. In contrast to other enteric pathogens, C. jejuni has strict growth and nutritional requirements but lacks many virulence factors that have evolved for pathogenesis or interactions with the host. It is unclear how this bacterium has adapted to an enteric lifestyle.

      • Bacterial pathogens
      • Campylobacter
  19. A VPS15-like kinase regulates apicoplast biogenesis and autophagy by promoting PI3P generation in Toxoplasma gondii

    • PLOS Pathogens
    • by Rahul Singh Rawat, Priyanka Bansal, Pushkar Sharma Phosphoinositides are important second messengers that regulate key cellular processes in eukaryotes. While it is known that a single phosphoinositol-3 kinase (PI3K) catalyses the formation of 3’-phosphorylated phosphoinositides (PIPs) in apicomplexan parasites like Plasmodium and Toxoplasma, how its activity and PI3P formation is regulated has remained unknown.

      • Parasites
      • Toxoplasma gondii
  20. A positive feedback loop mediates crosstalk between calcium, cyclic nucleotide and lipid signalling in calcium-induced Toxoplasma gondii egress

    • PLOS Pathogens
    • by Stephanie D. Nofal, Caia Dominicus, Malgorzata Broncel, Nicholas J. Katris, Helen R. Flynn, Gustavo Arrizabalaga, Cyrille Y. Botté, Brandon M. Invergo, Moritz Treeck Fundamental processes that govern the lytic cycle of the intracellular parasite Toxoplasma gondii are regulated by several signalling pathways. However, how these pathways are connected remains largely unknown.

      • Parasites
      • Toxoplasma gondii
  21. Metabolic flexibilities and vulnerabilities in the pentose phosphate pathway of the zoonotic pathogen Toxoplasma gondii

    • PLOS Pathogens
    • by Ningbo Xia, Xuefang Guo, Qinghong Guo, Nishith Gupta, Nuo Ji, Bang Shen, Lihua Xiao, Yaoyu Feng Metabolic pathways underpin the growth and virulence of intracellular parasites and are therefore promising antiparasitic targets.

      • Parasites
      • Toxoplasma gondii
  22. Single domain antibodies against enteric pathogen virulence factors are active as curli fiber fusions on probiotic E. coli Nissle 1917

    • PLOS Pathogens
    • by Ilia Gelfat, Yousuf Aqeel, Jacqueline M. Tremblay, Justyna J. Jaskiewicz, Anishma Shrestha, James N. Lee, Shenglan Hu, Xi Qian, Loranne Magoun, Abhineet Sheoran, Daniela Bedenice, Colter Giem, Avinash Manjula-Basavanna, Amanda R. Pulsifer, Hann X. Tu, Xiaoli Li, Marilyn L. Minus, Marcia S. Osburne, Saul Tzipori, Charles B. Shoemaker, John M. Leong, Neel S.

      • Bacterial pathogens
      • Shigella
      • Parasites
      • Cryptosporidium parvum
  23. Escherichia coli BarA-UvrY regulates the pks island and kills Staphylococci via the genotoxin colibactin during interspecies competition

    • PLOS Pathogens
    • by Jun Jie Wong, Foo Kiong Ho, Pei Yi Choo, Kelvin K. L. Chong, Chee Meng Benjamin Ho, Ramesh Neelakandan, Damien Keogh, Timothy Barkham, John Chen, Chuan Fa Liu, Kimberly A. Kline Wound infections are often polymicrobial in nature, biofilm associated and therefore tolerant to antibiotic therapy, and associated with delayed healing. Escherichia coli and Staphylococcus aureus are among the most frequently cultured pathogens from wound infections.

      • Bacterial pathogens
      • Staphylococcus aureus
  24. An apical protein, Pcr2, is required for persistent movement by the human parasite Toxoplasma gondii

    • PLOS Pathogens
    • by Jonathan Munera Lopez, Isadonna F. Tengganu, Jun Liu, John M. Murray, Luisa F. Arias Padilla, Ying Zhang, Peter T. Brown, Laurence Florens, Ke Hu The phylum Apicomplexa includes thousands of species of unicellular parasites that cause a wide range of human and animal diseases such as malaria and toxoplasmosis. To infect, the parasite must first initiate active movement to disseminate through tissue and invade into a host cell, and then cease moving once inside.

      • Parasites
      • Toxoplasma gondii
  25. Assembly of ordered DNA-curli fibril complexes during Salmonella biofilm formation correlates with strengths of the type I interferon and autoimmune responses

    • PLOS Pathogens
    • by Lauren K. Nicastro, Jaime de Anda, Neha Jain, Kaitlyn C. M. Grando, Amanda L. Miller, Shingo Bessho, Stefania Gallucci, Gerard C. L. Wong, Çagla Tükel Deposition of human amyloids is associated with complex human diseases such as Alzheimer’s and Parkinson’s. Amyloid proteins are also produced by bacteria.

      • Bacterial pathogens
      • Salmonella