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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1 - 25 of 226

  1. Screen the unforeseen: Microbiome‐profiling for detection of zoonotic pathogens in wild rats

    • Transboundary and Emerging Diseases
    • Abstract Wild rats can host various zoonotic pathogens. Detection of these pathogens is commonly performed using molecular techniques targeting one or a few specific pathogens. However, this specific way of surveillance could lead to (emerging) zoonotic pathogens staying unnoticed. This problem may be overcome by using broader microbiome‐profiling techniques, which enable broad screening of a sample's bacterial or viral composition.

      • Viruses
      • Hepatitis
  2. Seroprevalence of Toxoplasma gondii infection in sheep and goats from different geographical regions of the world: Systematic review and meta‐analysis

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Accepted Article. The Toxoplasma gondii is an obligate intracellular protozoan parasite which significantly impact small ruminant productivity, international animal trade and transboundary movement of animal across the globe. The seroprevalence of T.

      • Parasites
      • Toxoplasma gondii
  3. Prevalence, main serovars and anti‐microbial resistance profiles of non‐typhoidal Salmonella in poultry samples from the Americas: A systematic review and meta‐analysis

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Volume 69, Issue 5, Page 2544-2558, September 2022. Poultry and poultry-derived products such as meat and eggs are among the main sources of non-typhoidal Salmonella (NTS) transmission to humans.

      • Bacterial pathogens
      • Salmonella
  4. Dynamics and epidemiology of Toxoplasma gondii oocyst shedding in domestic and wild felids

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Volume 69, Issue 5, Page 2412-2423, September 2022. Oocyst shedding in domestic and wild felids is a critical yet understudied topic in Toxoplasma gondii ecology and epidemiology that shapes human and animal disease burden.

      • Parasites
      • Toxoplasma gondii
  5. A systematic review of Toxoplasma gondii genotypes in Gallus gallus domesticus worldwide: The focus is Brazil

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Volume 69, Issue 5, Page 2440-2450, September 2022. Toxoplasma gondii was initially classified in three main lineages related to its virulence: Types I, II, and III. The recombination of genes during sexual cycle in felids gut led to more than 200 genotypes, found in ToxoDB database, using 11 RFLP markers. Free-range chickens are good bioindicators of soil contamination with T. gondii oocysts.

      • Parasites
      • Toxoplasma gondii
  6. Detection of Toxoplasma gondii oocysts in soil and risk mapping in an Island environment in the Northeast of Brazil

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Accepted Article. Toxoplasmosis is an emerging and re-emerging infectious disease that can be transmitted through a contaminated environment. Environmental contamination is an emergency health issue and determining its occurrence is fundamental to a One Health approach. In this study we addressed the extent of environmental contamination and viability of T.

      • Parasites
      • Toxoplasma gondii
  7. Monitoring of hepatitis E virus in zoo animals from Spain, 2007–2021

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Accepted Article. Hepatitis E virus (HEV, family Hepeviridae) is an important emerging and zoonotic pathogen. In recent decades, the number of human cases of zoonotic hepatitis E has increased considerably in industrialized countries and HEV has been detected in an expanding range of mammal species.

      • Viruses
      • Hepatitis
  8. Detection of hepatitis E virus in milk: current evidence for viral excretion in a wide range of mammalian hosts

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Accepted Article. Infection with hepatitis E virus (HEV) is common in both developing and industrialized nations. Genotypes 3 and 4 are increasingly being reported, particularly in high-income countries where the precise extent of HEV transmission via food is currently unclear.

      • Viruses
      • Hepatitis
  9. Molecular characterization of Giardia duodenalis and evidence for cross‐species transmission in Northern Argentina

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Volume 69, Issue 4, Page 2209-2218, July 2022. Anthropogenic activities, such as human population expansion and land-use change, create ecological overlap between humans, domesticated animals, and wildlife and can exacerbate the zoonotic transmission of parasites.

      • Parasites
      • Giardia lamblia
  10. Evolutionary history and spatiotemporal dynamic of GIII norovirus: From emergence to classification in four genotypes

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Volume 69, Issue 4, Page 1872-1879, July 2022. Noroviruses belong to a genetically diverse group of viruses infecting a wide range of mammalian host species, and those detected in cattle and sheep are classified within genogroup III (GIII).

      • Viruses
      • Norovirus
  11. A pilot study revealing host‐associated genetic signatures for source attribution of sporadic Campylobacter jejuni infection in Egypt

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Volume 69, Issue 4, Page 1847-1861, July 2022. Campylobacter jejuni (C. jejuni), is considered among the most common bacterial causes of human bacterial gastroenteritis worldwide. The epidemiology and the transmission dynamics of campylobacteriosis in Egypt remain poorly defined due to the limited use of high-resolution typing methods.

      • Bacterial pathogens
      • Campylobacter
  12. Molecular characterization of Vibrio cholerae O1 El Tor strains in Malaysia revealed genetically diverse variant lineages

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Volume 69, Issue 4, Page e693-e703, July 2022. Vibrio cholerae O1 El Tor variants have been the major causative agents of cholera worldwide since their emergence in the 2000s. Cholera remains endemic in some regions in Malaysia. Therefore, we aimed to investigate the genetic characteristics of the V.

      • Bacterial pathogens
      • Vibrio
  13. Genetic characterization of hepatitis E virus from wild boar in China

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Accepted Article. Hepatitis E virus (HEV), the causative agent of hepatitis E (HE), is classified into four major genotypes (1–4), with wild boar being the main natural reservoir for genotypes 3 and 4. However, little is known about the prevalence of HEV infection in wild boars in China.

      • Viruses
      • Hepatitis
  14. Low prevalence of hepatitis E virus in the liver of Corsican pigs slaughtered after 12 months despite high antibody seroprevalence

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Accepted Article. Hepatitis E virus (HEV) infection can be acute and benign or evolve to chronic hepatitis with rapid progression toward cirrhosis or liver failure in humans. Hence, Hepatitis E (HE) disease is a major public health concern. In countries where pig populations are highly contaminated with HEV, human cases of HE are mainly foodborne, occurring frequently after consumption of raw or undercooked pork products or liver.

      • Viruses
      • Hepatitis
  15. Hepatitis E virus in the endangered Iberian lynx (Lynx pardinus)

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Accepted Article. Hepatitis E virus (HEV) is an emerging zoonotic pathogen in Europe. In the Iberian Peninsula, wild boar (Sus scrofa) is considered the main wildlife reservoir of HEV. This wild ungulate shares habitat and resources with other potential HEV carriers in Iberian Mediterranean ecosystems, although information about the role of such sympatric species in the HEV epidemiological cycle is still very limited.

      • Viruses
      • Hepatitis
  16. Isolation of 15 hepatitis E virus strains lacking ORF1 rearrangements from wild boar and pig organ samples and efficient replication in cell culture

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Accepted Article. As a zoonotic pathogen, the hepatitis E virus (HEV) leads to numerous infections in humans with different clinical manifestations. Especially genotype 3, as causative agent of a foodborne zoonosis, is transmitted to humans by ingestion of undercooked or raw meat containing liver from HEV infected animals.

      • Viruses
      • Hepatitis
  17. Novel subtypes and unexpected heterogeneity of hepatitis E viral strains in wild boar captured in a small area in Central Italy

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Accepted Article. Wild boar is the main sylvatic reservoir of the genotype 3 of hepatitis E virus (HEV). The occurrence of HEV-3 human cases has been linked to the consumption of raw or undercooked pig and wild boar meat and liver. The zoonotic transmission of HEV-3 has been confirmed by sequencing identical or strictly related viral strains in humans, wild boar, and derived food.

      • Viruses
      • Hepatitis
  18. Genomic characteristics and recombination patterns of swine hepatitis E virus in China

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Accepted Article. Zoonotic hepatitis E, mainly caused by swine hepatitis E virus (sHEV), is endemic in China, causing great economic disruption and public health threats. Although recombination is critical for the evolution of viruses, there is a limited assessment of its occurrence among sHEVs.

      • Viruses
      • Hepatitis
  19. Genetic diversity of Toxoplasma gondii isolates from rodents in the world: A systematic review

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Volume 69, Issue 3, Page 943-957, May 2022. Toxoplasmosis is one of the most frequent food-borne infections in humans caused by an obligate intracellular protozoan parasite, Toxoplasma gondii. Rodents, as intermediate and reservoir hosts, play key role in the epidemiology of toxoplasmosis; because they are the main source of infection for the Felidae family members and establish the parasite life cycle.

      • Parasites
      • Toxoplasma gondii
  20. Socioeconomic factors associated with infection by Toxoplasma gondii and Toxocara canis in children

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Volume 69, Issue 3, Page 1589-1595, May 2022. The intense contact of children with domestic animals or environments contaminated with faeces of these animals, together with habits related to lack of hygiene, can facilitate infection by zoonoses. The study evaluated the seroprevalence and risk factors associated with toxoplasmosis and toxocariasis in schoolchildren in the city of Jataizinho, Paraná.

      • Parasites
      • Toxoplasma gondii
  21. Prevalence and molecular characterization of foodborne and human‐derived Salmonella strains for resistance to critically important antibiotics

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Accepted Article. The primary goals of this cross-sectional study were to screen various food/water, and human samples for the presence of Salmonella species, and to assess the phenotypic and genetic relationship between resistances found in food and human Salmonella isolates to critically important antibiotics.

      • Bacterial pathogens
      • Salmonella
  22. A novel Chaphamaparvovirus is the etiological agent of hepatitis outbreaks in pheasants (Phasianus colchicus) characterized by high mortality

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Accepted Article. In the present study, we report the occurrence of several outbreaks of hepatitis in flocks of young pheasants in France, between 2017 and 2021. The disease was characterized by prostration, apathy and a median cumulative mortality of 12%, with the birds presenting multifocal to coalescing necrotizing hepatitis on necropsy.

      • Viruses
      • Hepatitis
  23. Isolation, genotyping and virulence determination of a Toxoplasma gondii strain from non‐human primate from China

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Volume 69, Issue 2, Page 919-925, March 2022. Toxoplasma gondii infects almost all warm-blooded animals, including humans and non-human primates. Many cases of T. gondii infection in non-human primates have been reported worldwide. In this study, 15 monkeys were collected from zoos in Henan Province between 2016 and 2019.

      • Parasites
      • Toxoplasma gondii
  24. A type II variant of Toxoplasma gondii infects the Eurasian otter (Lutra lutra) in southern Italy

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Volume 69, Issue 2, Page 874-880, March 2022. Toxoplasmosis, caused by the protozoan parasite Toxoplasma gondii, is a widespread zoonosis capable to affect a wide range of warm-blooded vertebrates. In the past two decades, T. gondii emerged as a significant aquatic pathogen with some pathogenic atypical genotypes isolated and characterized from stranded marine mammals.

      • Parasites
      • Toxoplasma gondii
  25. Natural co‐infection of divergent hepatitis B and C virus homologues in carnivores

    • Transboundary and Emerging Diseases
    • Transboundary and Emerging Diseases, Volume 69, Issue 2, Page 195-203, March 2022. In humans, co-infection of hepatitis B and C viruses (HBV, HCV) is common and aggravates disease outcome. Infection-mediated disease aggravation is poorly understood, partly due to lack of suitable animal models. Carnivores are understudied for hepatitis virus homologues. We investigated Mexican carnivores (ringtails, Bassariscus astutus) for HBV and HCV homologues.

      • Viruses
      • Hepatitis