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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 201 - 225 of 628

  1. The Clinical Presentation of Culture-positive and Culture-negative, Quantitative Polymerase Chain Reaction (qPCR)-Attributable Shigellosis in the Global Enteric Multicenter Study and Derivation of a Shigella Severity Score: Implications for Pediatric...

    • Clinical Infectious Diseases
    • Background Shigella is a leading cause of childhood diarrhea and target for vaccine development. Microbiologic and clinical case definitions are needed for pediatric field vaccine efficacy trials.

      • Shigella
      • Bacterial pathogens
  2. Diarrheal Pathogens Associated With Growth and Neurodevelopment

    • Clinical Infectious Diseases
    • Background Diarrheal pathogens have been associated with linear growth deficits. The effect of diarrheal pathogens on growth is likely due to inflammation, which also adversely affects neurodevelopment. We hypothesized that diarrheagenic pathogens would be negatively associated with both growth and neurodevelopment.

      • Campylobacter
      • Norovirus
      • Shigella
      • Bacterial pathogens
      • Viruses
  3. Discovery and Bioactivity of the Novel Lasso Peptide Microcin Y

    • Journal of Agricultural and Food Chemistry
    • Lasso peptides, a class of ribosomally synthesized and post-translationally modified peptides (RiPPs) secreted by bacteria, have antimicrobial activity. Here, a novel lasso peptide, microcin Y (MccY), was discovered and characterized. The gene cluster for MccY synthesis was cloned for expression in Escherichia coli. This peptide was purified by HPLC and characterized by Q-TOF.

      • Salmonella
      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  4. Effects of three essential oils and their nano-emulsions on Listeria monocytogenes and Shigella flexneri in Egyptian Talaga cheese

    • International Journal of Food Microbiology
    • Author(s): Walaa M. Elsherif, Lamiaa M. Talaat AL Shrief

      • Bacterial pathogens
      • Listeria monocytogenes
      • Shigella
  5. Selective Thermotolerant Lactic Acid Bacteria Isolated From Fermented Juice of Epiphytic Lactic Acid Bacteria and Their Effects on Fermentation Quality of Stylo Silages

    • Frontiers in Microbiology
    • The aim of the present study was to isolate and identify lactic acid bacteria (LAB) from fermented juice of tropical crops such as Napier grass, Ruzi grass, Purple guinea grass, Stylo legume, and Leucaena and their application to improve the quality of tropical crop silage. Fifteen strains of LAB were isolated.

      • Shigella
      • Bacterial pathogens
      • Bacillus cereus
  6. Shigella escapes lysosomal degradation through inactivation of Rab31 by IpaH4.5

    • Microbiology
    • is an intracellular bacterial pathogen that utilizes a type III secretion apparatus to inject effector proteins into host cells.

      • Bacterial pathogens
      • Shigella
  7. Behavior of Salmonella Enteritidis and Shigella flexneri during induction and recovery of the viable but nonculturable state

    • FEMS Microbiology Letters
    • ABSTRACT Bacteria may enter into a viable but nonculturable (VBNC) state as a response to stresses, such as those found in food processing. Cells in the VBNC state lose the ability to grow in a conventional culture medium but man recover culturability. The viability, culturability and intracellular reactive oxygen species (ROS) of Salmonella Enteritidis and Shigella flexneri were evaluated under stress conditions to induce a VBNC state.

      • Salmonella
      • Shigella
      • Bacterial pathogens
  8. Therapeutic target identification via differential genome analysis of antibiotic resistant Shigella sonneii and inhibitor evaluation against a selected drug target

    • Infection, Genetics and Evolution
    • Author(s): Zarrin Basharat, Muhammad Jahanzaib, Noor Rahman

      • Shigella
      • Bacterial pathogens
  9. Virulence factors and molecular characteristics of Shigella flexneri isolated from calves with diarrhea

    • BMC Microbiology
    • Background
      The natural hosts of Shigella are typically humans and other primates, but it has been shown that the host range of Shigella has expanded to many animals. Although Shigella is becoming a major threat to animals, there is limited information on the genetic background of local strains. The purpose of this study was to assess the presence of virulence factors and the molecular characteristics of S. flexneri isolated from calves with diarrhea.

      • Shigella
      • Bacterial pathogens
  10. Modulation of the Intestinal Microbiota by the Early Intervention with Clostridium Butyricum in Muscovy Ducks

    • Antibiotics
    • This study evaluated the effects of early intervention with Clostridium butyricum (C. butyricum) on shaping the intestinal microbiota of Muscovy ducklings. A total of 160 1-day-old male ducks were randomly divided into two groups: the CB group was administered with 1 mL of C. butyricum (2 × 109 CFU/mL), while the C group was given 1 mL of saline. The administration lasted for 3 days. We found that C. butyricum had no significant effect on growth performance.

      • Shigella
      • Bacterial pathogens
  11. Differences in Manifestations and Gut Microbiota Composition Between Patients With Different Henoch-Schonlein Purpura Phenotypes

    • Frontiers in Cellular and Infection Microbiology
    • Background

      Gut microbiota plays an important role in the pathogenesis of immune-mediated diseases. However, the complex pathogenesis of Henoch-Schonlein Purpura (HSP) remains elusive. This study aimed to characterize the gut microbiota in HSP patients and explore the potential association between gut microbiota composition and phenotypic changes in HSP.

      Methods

      • Shigella
      • Bacterial pathogens
  12. Circulation of multidrug-resistant Shigella sonnei and Shigella flexneri among men who have sex with men in Barcelona, Spain, 2015-2019.

    • International Journal of Antimicrobial Agents
    • Author(s): Albert Moreno-Mingorance, Paula Espinal, Virginia Rodriguez, Lidia Goterris, Anna Fàbrega, Judit Serra-Pladevall, M. Jesús Barberà, M. Alberny, Héctor Martín-González, Thais Cornejo-Sánchez, Mayuli Armas, Alba Mir-Cros, Alex Raventós, Belén Viñado, T. Pumarola, M.N. Larrosa, Juan José González-López

      • Shigella
      • Bacterial pathogens
  13. Lactosmart: A Novel Therapeutic Molecule for Antimicrobial Defense

    • Frontiers in Microbiology
    • The problem of antibiotic resistance has prompted researchers around the globe to search for new antimicrobial agents. Antimicrobial proteins and peptides are naturally secreted by almost all the living organisms to fight infections and can be safer alternatives to chemical antibiotics. Lactoferrin (LF) is a known antimicrobial protein present in all body secretions.

      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  14. Escherichia coli Shiga Toxins and Gut Microbiota Interactions

    • Toxins
    • Escherichia coli (EHEC) and Shigella dysenteriae serotype 1 are enterohemorrhagic bacteria that induce hemorrhagic colitis. This, in turn, may result in potentially lethal complications, such as hemolytic uremic syndrome (HUS), which is characterized by thrombocytopenia, acute renal failure, and neurological abnormalities.

      • Shigella
      • Bacterial pathogens
  15. The composition of bacteria in gut and beebread of stingless bees (Apidae: Meliponini) from tropics Yunnan, China

    • Antonie van Leeuwenhoek
    • Stingless bees are the main pollinators in tropical and subtropical regions. However, there are only a few studies on the structure and composition of bacteria in the gut and beebread of stingless bees, especially in China. To address this shortage of information, we characterized the microbiota of three common species of stingless bees (Lepidotrigona terminata, Lepidotrigona ventralis and Tetragonula pagdeni) and beebread samples of T. pagdeni.

      • Shigella
      • Bacterial pathogens
  16. Disruption of metabolic function and redox homeostasis as antibacterial mechanism of Lindera glauca fruit essential oil against Shigella flexneri

    • Food Control
    • Author(s): Feng Chen, Xiang Miao, Zixin Lin, Yu Xiu, Lingling Shi, Qian Zhang, Dongcheng Liang, Shanzhi Lin, Boxiang He

      • Shigella
      • Bacterial pathogens
  17. Composition and Biophysical Properties of the Sorting Platform Pods in the Shigella Type III Secretion System

    • Frontiers in Cellular and Infection Microbiology
    • Shigella flexneri, causative agent of bacillary dysentery (shigellosis), uses a type III secretion system (T3SS) as its primary virulence factor. The T3SS injectisome delivers effector proteins into host cells to promote entry and create an important intracellular niche. The injectisome’s cytoplasmic sorting platform (SP) is a critical assembly that contributes to substrate selection and energizing secretion.

      • Salmonella
      • Shigella
      • Bacterial pathogens
  18. Correction draft: RNA-Mediated Thermoregulation of Iron-Acquisition Genes in Shigella dysenteriae and Pathogenic Escherichia coli

    • PLOS ONE
    • by Andrew B. Kouse, Francesco Righetti, Jens Kortmann, Franz Narberhaus, Erin R. Murphy

      • Shigella
      • Bacterial pathogens
  19. Phytochemical Profile and Microbiological Activity of Some Plants Belonging to the Fabaceae Family

    • Antibiotics
    • This study aimed to investigate the chemical composition and the activity against Staphylococcus aureus (S. aureus) (ATCC 25923), Streptococcus pyogenes (S. pyogenes) (ATCC 19615), Escherichia coli (E. coli) (ATCC 25922), Pseudomonas aeruginosa (P. aeruginosa) (ATCC 27853), Shigella flexneri (S. flexneri) (ATCC 12022), Salmonella typhimurium (S. typhimurium) (ATCC 14028), Haemophillus influenzae (H. influenza) type B (ATCC 10211) and two fungal strains: Candida albicans (C.

      • Salmonella
      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  20. Lewis Blood-group Antigens Are Associated With Altered Susceptibility to Shigellosis

    • Clinical Infectious Diseases
    • In a cohort of infants, we found that lack of the Lewis histo-blood group antigen was associated with increased susceptibility to shigellosis. Broadly inhibiting fucosylation in epithelial cells in vitro decreased invasion by Shigella flexneri. These results support a role for fucosylated glycans in susceptibility to shigellosis.

      • Shigella
      • Bacterial pathogens
  21. Duration of Postdiarrheal Enteric Pathogen Carriage in Young Children in Low-resource Settings

    • Clinical Infectious Diseases
    • Background Prolonged enteropathogen shedding after diarrhea complicates the identification of etiology in subsequent episodes and is an important driver of pathogen transmission. A standardized approach has not been applied to estimate the duration of shedding for a wide range of pathogens.

      • Shigella
      • Cryptosporidium parvum
      • Bacterial pathogens
      • Parasites
  22. Prevalence and associated risk factors of Shigella flexneri isolated from drinking water and retail raw foods in Peshawar, Pakistan

    • Journal of Food Science
    • Journal of Food Science, EarlyView. This study was designed to investigate the prevalence and associated risk factors of Shigella flexneri isolated from drinking water and retail raw food samples in Peshawar, Pakistan. A total of 1,020 different samples were collected from various areas of Peshawar between January 2016 and May 2017, followed by identification of S. flexneri through biochemical, serological, and 16S rRNA gene sequencing.

      • Shigella
      • Bacterial pathogens
  23. Chemical composition, antimicrobial, antioxidant and cytotoxic activity of the essential oil from the leaves of Stachys pilifera Benth

    • FEMS Microbiology Letters
    • ABSTRACT Stachys pilifera Benth is an endemic species of Stachys family found in Iran with a wide application as an herbal tea. The objective of this research was to evaluate the antimicrobial, antioxidant and cytotoxic activity of the essential oil from the aerial parts of S. pilifera.

      • Salmonella
      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
      • Bacillus cereus
  24. Antimicrobial and anti-biofilm activity of thymoquinone against Shigella flexneri

    • Applied Microbiology and Biotechnology

      • Shigella
      • Bacterial pathogens
  25. Virulence profiling of Shigella flexneri and emergence of serotype 2b as a highly virulent shigellosis causing strain in Pakistan

    • Infection, Genetics and Evolution
    • Author(s): Iqbal Nisa, Muhammad Qasim, Arnold Driessen, Jeroen Nijland, Fazal Adnan, Malik Nawaz Shuja, Hazir Rahman

      • Shigella
      • Bacterial pathogens