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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1 - 25 of 347

  1. Antimicrobial resistance, virulence potential and genomic epidemiology of global genomes of the rare Salmonella enterica serovar Orion

    • Zoonoses and Public Health
    • Abstract Aims Our aim is to characterize through whole‐genome sequencing (WGS) the antimicrobial resistance (AMR) and heavy metal tolerance (HMT) genes content, plasmid presence, virulence potential and genomic diversity of the rare non‐typhoid Salmonella enterica serovar Orion (S. Orion) from 19 countries of the African, American, Eastern Mediterranean, European, Southeastern Asia and Western Pacific regions. Methods and Results Totally 324 S.

      • Bacterial pathogens
      • Salmonella
      • Chemical contaminants
      • Heavy Metals
  2. Identification of novel small molecule inhibitors of twin arginine translocation (Tat) pathway and their effect on the control of Campylobacter jejuni in chickens

    • Frontiers in Microbiology
    • IntroductionControl of Campylobacter from farm to fork is challenging due to the frequent emergence of antimicrobial-resistant isolates. Furthermore, poultry production systems are known reservoirs of Campylobacter. The twin-arginine translocation (Tat) pathway is a crucial bacterial secretion system that allows Campylobacter to colonize the host intestinal tract by using formate as the main source of energy.

      • Bacterial pathogens
      • Campylobacter
      • Chemical contaminants
      • Antibiotic residues
  3. Serotype and anti‐microbial resistance trends among bovine Salmonella isolates from samples submitted to a veterinary diagnostic laboratory in central New York, 2007–2021

    • Zoonoses and Public Health
    • Abstract Aims Salmonella enterica is a leading cause of acute enteritis in people, and dairy cattle are an important reservoir of this pathogen. The objective of this study was to analyse serotype and anti‐microbial resistance trends of Salmonella isolated from dairy cattle in the United States between 2007 and 2021. Methods and Results We collected data for bovine Salmonella isolates obtained from samples submitted to Cornell University's Animal Health Diagnostic Center (AHDC).

      • Bacterial pathogens
      • Salmonella
      • Chemical contaminants
      • Dioxins
  4. Listeria monocytogenes from food and food industry environments with reduced susceptibility to benzalkonium chloride, sodium hypochlorite, and peracetic acid

    • FEMS Microbiology Letters
    • The growing number of Listeria monocytogenes strains displaying increased tolerance to sanitizers widely applied in the food industry is becoming a problem. The aims of this study were to evaluate the susceptibility of L.

      • Bacterial pathogens
      • Listeria monocytogenes
      • Chemical contaminants
      • Heavy Metals
  5. Rapid Screening and Comparison of Chimeric Lysins for Antibacterial Activity against Staphylococcus aureus Strains

    • Antibiotics
    • Chimeric lysins composed of various combinations of cell wall-lysing (enzymatic) and cell-wall-binding (CWB) domains of endolysins, autolysins, and bacteriocins have been developed as alternatives to or adjuvants of conventional antibiotics. The screening of multiple chimeric lysin candidates for activity via E. coli expression is not cost effective, and we previously reported on a simple cell-free expression system as an alternative.

      • Bacterial pathogens
      • Staphylococcus aureus
      • Chemical contaminants
      • Heavy Metals
  6. Ultra-Small Silver Nanoparticles: A Sustainable Green Synthesis Approach for Antibacterial Activity

    • Antibiotics
    • The present study centers on the synthesis of ultra-small silver nanoparticles (AgNPs) with antibacterial properties using citrus peel residues (orange, lemon, and grapefruit) as reducing and stabilizing agents, and on assessing their antibacterial activity against multidrug-resistant clinical Staphylococcus aureus. The synthesized AgNPs were analyzed by various techniques, including UV-Vis spectroscopy, SAED, TEM, XRD, FTIR, and Raman.

      • Bacterial pathogens
      • Staphylococcus aureus
      • Chemical contaminants
      • Antibiotic residues
  7. Limosilactobacillus fermentum 3872 That Produces Class III Bacteriocin Forms Co-Aggregates with the Antibiotic-Resistant Staphylococcus aureus Strains and Induces Their Lethal Damage

    • Antibiotics
    • LF3872 was isolated from the milk of a healthy lactating and breastfeeding woman. Earlier, the genome of LF3872 was sequenced, and a gene encoding unique bacteriocin was discovered. We have shown here that the LF3872 strain produces a novel thermolabile class III bacteriolysin (BLF3872), exhibiting antimicrobial activity against antibiotic-resistant Staphylococcus aureus strains.

      • Bacterial pathogens
      • Staphylococcus aureus
      • Chemical contaminants
      • Antibiotic residues
  8. Geraniol-a potential alternative to antibiotics for bovine mastitis treatment without disturbing the host microbial community or causing drug residues and resistance

    • Frontiers in Cellular and Infection Microbiology
    • Mastitis is one of the most prevalent diseases of dairy cows. Currently, mastitis treatment in dairy cows is mainly based on antibiotics. However, the use of antibiotics causes adverse effects, including drug resistance, drug residues, host-microbiome destruction, and environmental pollution. The present study sought to investigate the potentiality of geraniol as an alternative to antibiotics for bovine mastitis treatment in dairy cows.

      • Bacterial pathogens
      • Staphylococcus aureus
      • Chemical contaminants
      • Antibiotic residues
  9. Prevalence and Antibiotic Resistance of Staphylococcus aureus and Escherichia coli Isolated from Bovine Raw Milk in Lebanon: A study on Antibiotic Usage, Antibiotic Residues, and Assessment of Human Health Risk Using the One Health Approach

    • Antibiotics
    • The emergence, persistence, and spread of antibiotic-resistant microbes is a tremendous public health threat that is considered nowadays a critical One Health issue. In Lebanon, the consumption of raw bovine milk has been recently reported as a result of the financial crisis.

      • Bacterial pathogens
      • Staphylococcus aureus
      • Chemical contaminants
      • Antibiotic residues
  10. Prevalence of efflux pump and heavy metal tolerance encoding genes among Salmonella enterica serovar Infantis strains from diverse sources in Brazil

    • PLOS ONE
    • by Felipe Pinheiro Vilela, Dália dos Prazeres Rodrigues, Marc William Allard, Juliana Pfrimer Falcão Salmonella enterica subspecies enterica serovar Infantis (S. Infantis) is a non-typhoid, zoonotic and foodborne serovar with worldwide distribution, and often associated with increasing antimicrobial resistance. Efflux pumps are antimicrobial resistance mechanisms able to promote and increase resistance levels to multiple distinct drug classes.

      • Bacterial pathogens
      • Salmonella
      • Chemical contaminants
      • Heavy Metals
  11. The population structure and genetic diversity of Listeria monocytogenes ST9 strains based on genomic analysis

    • Frontiers in Microbiology
    • Listeria monocytogenes is a ubiquitous foodborne pathogen causing both invasive and non-invasive listeriosis. Sequence type (ST) 9 strains is common in food and food processing environments. In this study, the whole-genome sequences (WGS) of 207 ST9 isolates from different sources, geographical locations (14 countries), and isolated years were analyzed.

      • Bacterial pathogens
      • Listeria monocytogenes
      • Chemical contaminants
      • Heavy Metals
  12. Structures, biosynthesis, and bioactivities of prodiginine natural products

    • Applied Microbiology and Biotechnology
    • Prodiginines are a large family of microbial secondary metabolites with a core structure of tripyrrole rings. They exhibit not only diverse chemical structures but also rich biological activities, such as anti-cancer, anti-microbial, anti-algae, anti-parasitic, pesticides, and UV radiation resistance.

      • Bacterial pathogens
      • Vibrio
      • Chemical contaminants
      • Heavy Metals
  13. Antibacterial Activity of Squaric Amide Derivative SA2 against Methicillin-Resistant Staphylococcus aureus

    • Antibiotics
    • Methicillin-resistant Staphylococcus aureus (MRSA)-caused infection is difficult to treat because of its resistance to commonly used antibiotic, and poses a significant threat to public health. To develop new anti-bacterial agents to combat MRSA-induced infections, we synthesized novel squaric amide derivatives and evaluated their anti-bacterial activity by determining the minimum inhibitory concentration (MIC).

      • Bacterial pathogens
      • Staphylococcus aureus
      • Chemical contaminants
      • Heavy Metals
  14. Cytotoxicity and anti-biofilm activities of biogenic cadmium nanoparticles and cadmium nitrate: a preliminary study

    • World Journal of Microbiology and Biotechnology
    • Wild-type microorganisms have become tolerant to higher antibiotic and antimicrobial agent concentrations due to the global increase in antibiotic consumption. Green-synthesized nanoparticles (NPs) have been proposed as potential antimicrobial agents to overcome the problem. This research prepared cadmium nanoparticles (Cd NPs) using Artemisia persica extract.

      • Bacterial pathogens
      • Staphylococcus aureus
      • Chemical contaminants
      • Heavy Metals
  15. Sequestration and efflux largely account for cadmium and copper resistance in the deep sea Nitratiruptor sp. SB155‐2 (Phylum Campylobacterota)

    • Environmental Microbiology
    • Environmental Microbiology, Accepted Article. In deep-sea hydrothermal vent environments, metal-enriched fluids and sediments abound, making these habitats ideal to study metal resistance in prokaryotes.

      • Bacterial pathogens
      • Campylobacter
      • Chemical contaminants
      • Heavy Metals
  16. Indole pyruvate decarboxylase gene regulates the auxin synthesis pathway in rice by interacting with the indole-3-acetic acid–amido synthetase gene, promoting root hair development under cadmium stress

    • Frontiers in Plant Science
    • This research focused on cadmium (Cd), which negatively affects plant growth and auxin hemostasis. In plants, many processes are indirectly controlled through the expression of certain genes due to the secretion of bacterial auxin, as indole-3-acetic acid (IAA) acts as a reciprocal signaling molecule in plant–microbe interaction.

      • Bacterial pathogens
      • Bacillus cereus
      • Chemical contaminants
      • Heavy Metals
  17. Cadmium and copper mixture effects on immunological response and susceptibility to Vibrio harveyi in white shrimp Litopenaeus vannamei

    • Fish & Shellfish Immunology
    • Cadmium (Cd2+) and copper (Cu2+) are considered immunotoxic metals and their presence in combination in the aquatic environment may cause effects on shrimp species as Litopenaeus vannamei. Thus, this research evaluates the combined effects of Cd2+ and Cu2+ on shrimp inoculated with Vibrio harveyi bacteria. The experiments were performed at 96-hours of exposure to sublethal concentrations of both metals.

      • Bacterial pathogens
      • Vibrio
      • Chemical contaminants
      • Heavy Metals
  18. Improvement in Metal Immobilization with Biomineralization During Carbonate Precipitation by Poly-Lysine

    • Water, Air, & Soil Pollution
    • Microbially induced carbonate precipitation (MICP), a type of urease-based biomineralization, has been a well-researched technique in recent years for heavy metal immobilization; however, the efficiency of the process remains in question. Poly(amino acids) are known to enhance enzymatic activity.

      • Bacterial pathogens
      • Staphylococcus aureus
      • Chemical contaminants
      • Heavy Metals
  19. Development of 4-[4-(Anilinomethyl)-3-phenyl-pyrazol-1-yl] Benzoic Acid Derivatives as Potent Anti-Staphylococci and Anti-Enterococci Agents

    • Antibiotics
    • From a library of compounds, 11 hit antibacterial agents have been identified as potent anti-Gram-positive bacterial agents. These pyrazole derivatives are active against two groups of pathogens, staphylococci and enterococci, with minimum inhibitory concentration (MIC) values as low as 0.78 μg/mL. These potent compounds showed bactericidal action, and some were effective at inhibiting and eradicating Staphylococcus aureus and Enterococcus faecalis biofilms.

      • Bacterial pathogens
      • Staphylococcus aureus
      • Chemical contaminants
      • Heavy Metals
  20. Self-cleaved expression of recombinant lysostaphin from its cellulose binding domain fusion

    • Applied Microbiology and Biotechnology
    • Mature lysostaphin (mLst) is a glycineglycine endopeptidase, capable of specifically cleaving penta-glycine crosslinker in the peptidoglycan of Staphylococcus aureus cell wall. It is a very effective therapeutic enzyme to kill the multidrug-resistant S. aureus often encountered in hospital acquired infections. Fusing cellulose binding domain (CBD) to mLst significantly reduced the insoluble expression of mLst in E.

      • Bacterial pathogens
      • Staphylococcus aureus
      • Chemical contaminants
      • Antibiotic residues
  21. The thematic role of extracellular loop of VraG in activation of the membrane sensor GraS in a cystic fibrosis MRSA strain differs in nuance from the CA-MRSA strain JE2

    • PLOS ONE
    • by Junho Cho, William F. C. Rigby, Ambrose L. Cheung Patients with cystic fibrosis (CF) often suffer recurrent bronchial bacterial infections that lead to deterioration of lung function over time. The infections in CF patients are often due to S. aureus and P. aeruginosa that colonize the airways. Significantly, methicillin-resistant S.

      • Bacterial pathogens
      • Staphylococcus aureus
      • Chemical contaminants
      • Antibiotic residues
  22. Interlaboratory Evaluation of Enterococcus faecium NRRL B-2354 as a Salmonella Surrogate for Validating Thermal Treatment of Multiple Low-Moisture Foods

    • This multi-institutional study assessed the efficacy of Enterococcus faecium NRRL B-2354 as a non-pathogenic Salmonella surrogate for thermal processing of nonfat dry milk powder, peanut butter, almond meal, wheat flour, ground black pepper, and date paste. Each product was analyzed by two laboratories (five independent laboratories total), with the lead laboratory inoculating (E. faecium or a five-strain Salmonella enterica cocktail of S.

      • Bacterial pathogens
      • Salmonella
      • Chemical contaminants
      • Heavy Metals
  23. Genomic and Evolutionary Analysis of Salmonella enterica Serovar Kentucky Sequence Type 198 Isolated From Livestock In East Africa

    • Frontiers in Cellular and Infection Microbiology
    • Since its emergence in the beginning of the 90’s, multidrug-resistant (MDR) Salmonella enterica subsp. enterica serovar Kentucky has become a significant public health problem, especially in East Africa. This study aimed to investigate the antimicrobial resistance profile and the genotypic relatedness of Salmonella Kentucky isolated from animal sources in Ethiopia and Kenya (n=19).

      • Bacterial pathogens
      • Salmonella
      • Chemical contaminants
      • Dioxins
  24. Two New Sulfate-Modified Dibenzopyrones With Anti-foodborne Bacteria Activity From Sponge-Derived Fungus Alternaria sp. SCSIOS02F49

    • Frontiers in Microbiology
    • At present, foodborne diseases (FBDs) caused by bacteria are gradually increasing every year, and the development of new antibiotics is an urgent necessity for human beings. To find novel antibacterial compounds, three sponge-derived fungal strains (SCSIOS02F40, F46, and F49) were investigated. As a result, Alternaria sp.

      • Bacterial pathogens
      • Staphylococcus aureus
      • Chemical contaminants
      • Heavy Metals
  25. Investigation of chetomin as a lead compound and its biosynthetic pathway

    • Applied Microbiology and Biotechnology
    • Chaetomium fungi produce a diversity of bioactive compounds. Chaetomium cochliodes SD-280 possesses 91 secondary metabolite gene clusters and exhibits strong antibacterial activity. One of the active compounds responsible for that activity, chetomin, has a minimum inhibitory concentration (MIC) for anti-methicillin-resistant Staphylococcus aureus (MRSA) of 0.05 μg/mL (vancomycin: 0.625 μg/mL).

      • Bacterial pathogens
      • Staphylococcus aureus
      • Chemical contaminants
      • Heavy Metals