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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 1 - 25 of 25

  1. Novel next generation sequencing panel method for the multiple detection and identification of foodborne pathogens in agricultural wastewater

    • Frontiers in Microbiology
    • Detecting and identifying the origins of foodborne pathogen outbreaks is a challenging. The Next-Generation Sequencing (NGS) panel method offers a potential solution by enabling efficient screening and identification of various bacteria in one reaction.

      • Bacterial pathogens
      • Bacillus cereus
      • Staphylococcus aureus
      • Vibrio
      • Yersinia
  2. A novel carotenoid from Metabacillus idriensis LipT27: production, extraction, partial characterization, biological activities and use in textile dyeing

    • Archives of Microbiology
    • The present study reports the production, extraction, partial characterization, biological activities and use in textile dyeing of an orange pigment from Metabacillus idriensis strain LipT27 (MN818522.2). Pigment production occurred with 400 µg carotenoid/g biomass yield. Characterization of the methanol extracts of pigment by UV–Visible spectrophotometry, TLC, NMR, and FTIR indicated that the pigment was a carotenoid group pigment.

      • Bacterial pathogens
      • Staphylococcus aureus
      • Yersinia
  3. Bacteriophage Tail Proteins as a Tool for Bacterial Pathogen Recognition—A Literature Review

    • Antibiotics
    • In recent years, a number of bacterial detection methods have been developed to replace time-consuming culture methods. One interesting approach is to mobilize the ability of phage tail proteins to recognize and bind to bacterial hosts. In this paper, the authors provide an overview of the current methodologies in which phage proteins play major roles in detecting pathogenic bacteria.

      • Bacterial pathogens
      • Campylobacter
      • Listeria monocytogenes
      • Salmonella
      • Shigella
      • Staphylococcus aureus
      • Yersinia
  4. Impact of sumac, cumin, black pepper and red pepper extracts in the development of foodborne pathogens and formation of biogenic amines

    • European Food Research and Technology
    • The effects of sumac, cumin, black pepper and red pepper diethyl ether extracts on the growth of eight foodborne pathogens (FBP) and their biogenic amine (BA) production were investigated in histidine decarboxylase broth. The antimicrobial effect was determined by the minimum inhibitory (MIC) and minimum bactericidal (MBC) concentrations. Sumac extract showed the highest antimicrobial activity against FBP.

      • Bacterial pathogens
      • Campylobacter
      • Salmonella
      • Staphylococcus aureus
      • Yersinia
  5. Biologically synthesized silver nanoparticles, mediated by Bothriochloa laguroides, inhibit biofilm formation and eradicate mature biofilm of Yersinia enterocolitica and Staphylococcus aureus

    • Journal of Applied Microbiology
    • Journal of Applied Microbiology, Volume 132, Issue 1, Page 209-220, January 2022.

      • Bacterial pathogens
      • Staphylococcus aureus
      • Yersinia
  6. Biologically synthesized silver nanoparticles, mediated by Bothriochloa laguroides, inhibit biofilm formation and eradicate mature biofilm of Yersinia enterocolitica and Staphylococcus aureus.

    • Journal of Applied Microbiology
    • Journal of Applied Microbiology, Accepted Article. Aims
      To phytosynthesize silver nanoparticles (AgNPs) and determine their antibacterial and antibiofilm capacity against gram-positive and negative bacterial strains.

      • Yersinia
      • Staphylococcus aureus
      • Bacterial pathogens
  7. Take my breath away: studying pathogen invasion of the human lung using primary tissue models

    • Pathogens and Disease
    • ABSTRACT The human pulmonary environment is complex, containing a matrix of cells, including fibroblasts, epithelial cells, interstitial macrophages, alveolar macrophages and neutrophils. When confronted with foreign material or invading pathogens, these cells mount a robust response. Nevertheless, many bacterial pathogens with an intracellular lifecycle stage exploit this environment for replication and survival.

      • Yersinia
      • Staphylococcus aureus
      • Bacterial pathogens
  8. Bi- and Multi-directional Gene Transfer in the Natural Populations of Polyvalent Bacteriophages, and Their Host Species Spectrum Representing Foodborne Versus Other Human and/or Animal Pathogens

    • Food and Environmental Virology
    • Unraveling the trends of phage-host versus phage-phage coevolution is critical for avoiding possible undesirable outcomes from the use of phage preparations intended for therapeutic, food safety or environmental safety purposes. We aimed to investigate a phenomenon of intergeneric recombination and its trajectories across the natural populations of phages predominantly linked to foodborne pathogens.

      • Salmonella
      • Yersinia
      • Staphylococcus aureus
      • Bacterial pathogens
  9. Potential probiotic of Lactobacillus strains isolated from the intestinal tracts of pigs and feces of dogs with antibacterial activity against multidrug-resistant pathogenic bacteria

    • Archives of Microbiology
    • The occurrence of multidrug-resistant pathogenic bacteria, such as methicillin-resistant Staphylococcus aureus (MRSA), multidrug-resistant Acinetobacter baumannii (MDRAB), extended-spectrum β-lactamase (ESBL) Escherichia coli, and Pseudomonas aeruginosa, has become a serious problem in animals and public.

      • Bacterial pathogens
      • Bacillus cereus
      • Salmonella
      • Yersinia
      • Shigella
      • Staphylococcus aureus
  10. Biological activities of dihydroquercetin and its effect on the oxidative stability of butter oil

    • Journal of Food Processing and Preservation
    • Some biological activities of dihydroquercetin (DHQ), including antioxidative, antibacterial and anticancer activities, and the oxidative stability of butter oil supplemented with DHQ were evaluated. The DPPH* radical‐scavenging activity was high for DHQ, with an IC50 of 63.83 ± 3.11 μg/ml, compared to that of Trolox, which had an IC50 of 117.02 ± 5.19 μg/ml, over the concentrations studied (10–100 μg/ml).

      • Escherichia coli O157:H7
      • Listeria monocytogenes
      • Yersinia
      • Staphylococcus aureus
      • Bacterial pathogens
      • Bacillus cereus
  11. A multiplex PCR assay with a common primer for the detection of eleven foodborne pathogens

    • Journal of Food Science
    • Salmonella enterica, Listeria monocytogenes, Shigella flexneri, Escherichia coli O157:H7, Vibrio parahaemolyticus, Staphylococcus aureus, Vibrio cholerae, Clostridium botulinum type A, Bacillus cereus, Clostridium perfringens Alpha toxin, and Yersinia enterocolitica are 11 common foodborne pathogens. Traditional bacterial culture methods for detecting pathogens are time‐consuming and labor‐intensive.

      • Clostridium perfringens
      • Escherichia coli O157:H7
      • Listeria monocytogenes
      • Salmonella
      • Yersinia
      • Shigella
      • Vibrio
      • Staphylococcus aureus
      • Clostridium botulinum
      • Bacterial pathogens
      • Bacillus cereus
  12. Role of Starter Cultures on the Safety of Fermented Meat Products

    • Frontiers in Microbiology
      • Bacterial pathogens
      • Bacillus cereus
      • Campylobacter
      • Clostridium botulinum
      • Clostridium perfringens
      • Listeria monocytogenes
      • Staphylococcus aureus
      • Yersinia
      • Chemical contaminants
      • Natural toxins
      • Aflatoxins
      • Mycotoxins
  13. Rapid and reasonable molecular identification of bacteria and fungi in microbiological diagnostics using rapid real-time PCR and Sanger sequencing

    • Journal of Microbiological Methods
    • Available online 9 March 2019

      Author(s): Reinhard Sting, Tobias Eisenberg, Maja Hrubenja

      • Yersinia
      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  14. Toxigenic and pathogenic potential of enteric bacterial pathogens prevalent in the traditional fermented foods marketed in the Northeast region of India

    • International Journal of Food Microbiology
    • Available online 21 February 2019

      Author(s): Santosh Keisam, Ngangyola Tuikhar, Giasuddin Ahmed, Kumaraswamy Jeyaram

      • Clostridium perfringens
      • Listeria monocytogenes
      • Yersinia
      • Staphylococcus aureus
      • Clostridium botulinum
      • Bacterial pathogens
      • Bacillus cereus
  15. Enhanced bioaccessibility of green tea polyphenols and lipophilic activity of EGCG octaacetate on gram-negative bacteria

    • LWT
    • Publication date: Available online 30 January 2019

      Source: LWT

      Author(s): Kalaiselvi Ignasimuthu, Rajalakshmi Prakash, Pushpa S. Murthy, Nagarajan Subban

      • Bacterial pathogens
      • Yersinia
      • Staphylococcus aureus
  16. Inactivation of multidrug-resistant pathogens and Y. enterocolitica with cold atmospheric pressure plasma on stainless steel surfaces

    • International Journal of Antimicrobial Agents
    • Available online 31 August 2018

      Author(s): Karolina A. Lis, Corinna Kehrenberg, Annika Boulaaba, Maren von Köckritz-Blickwede, Sylvia Binder, Yangfang Li, Julia L. Zimmermann, Yvonne Pfeifer, Birte Ahlfeld

      • Yersinia
      • Staphylococcus aureus
      • Bacterial pathogens
  17. Occurrence of selected viral, bacterial and protozoan pathogens in fresh juices and smoothies in Prague, Czech Republic

    • Food Control
    • Publication date: November 2018

      , Volume 93

      Author(s): Radka Dziedzinska, Monika Moravkova, Jakub Hrdy, Iva Slana, Hana Vlkova, Hana Kunstovna, Petra Vasickova

      • Norovirus
      • Yersinia
      • Staphylococcus aureus
      • Giardia lamblia
      • Cryptosporidium parvum
      • Bacterial pathogens
      • Parasites
      • Viruses
  18. Bio-controlling capability of probiotic strain Lactobacillus rhamnosus against some common foodborne pathogens in yoghurt

    • International Dairy Journal
    • Publication date: October 2018
      Source:, Volume 85

      Author(s): Rania M. Kamal, Mohamed E. Alnakip, Salah F. Abd El Aal, Mohamed A. Bayoumi

      • Yersinia
      • Staphylococcus aureus
      • Bacterial pathogens
  19. The impact of dairy cows' bedding material and its microbial content on the quality and safety of milk – A cross sectional study of UK farms

    • International Journal of Food Microbiology
    • Publication date: Available online 19 December 2017


      Author(s): Andrew J. Bradley, Katharine A. Leach, Martin J. Green, Jenny Gibbons, Ian C. Ohnstad, David H. Black, Barbara Payne, Victoria E. Prout, James E. Breen

      • Listeria monocytogenes
      • Yersinia
      • Staphylococcus aureus
      • Bacterial pathogens
      • Bacillus cereus
  20. Next generation sequencing-based multigene panel for high throughput detection of food-borne pathogens

    • International Journal of Food Microbiology
    • Publication date: Available online 3 May 2017


      Author(s): Chiara Ferrario, Gabriele Andrea Lugli, Maria Cristina Ossiprandi, Francesca Turroni, Christian Milani, Sabrina Duranti, Leonardo Mancabelli, Marta Mangifesta, Giulia Alessandri, Douwe van Sinderen, Marco Ventura

      • Campylobacter
      • Listeria monocytogenes
      • Yersinia
      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  21. Identification of microbial communities, with a focus on foodborne pathogens, during kimchi manufacturing process using culture-independent and -dependent analyses

    • LWT
    • Publication date: August 2017
      Source:LWT - Food Science and Technology, Volume 81

      Author(s): Hae-Won Lee, So-Ra Yoon, Su-Ji Kim, Hee Min Lee, Jae Yong Lee, Ji-Hyun Lee, Sung Hyun Kim, Ji-Hyoung Ha

      • Bacillus cereus
      • Campylobacter
      • Clostridium perfringens
      • Listeria monocytogenes
      • Yersinia
      • Shigella
      • Vibrio
      • Staphylococcus aureus
      • Bacterial pathogens
  22. Development and evaluation of a dual priming oligonucleotide system-based multiplex PCR assay for simultaneous detection of six foodborne pathogens

    • European Food Research and Technology
    • Abstract

      • Campylobacter
      • Listeria monocytogenes
      • Yersinia
      • Shigella
      • Staphylococcus aureus
      • Bacterial pathogens
  23. Free-Living Species of Carnivorous Mammals in Poland: Red Fox, Beech Marten, and Raccoon as a Potential Reservoir of Salmonella, Yersinia, Listeria spp. and Coagulase-Positive Staphylococcus

    • PLOS ONE
    • Aneta Nowakiewicz, Przemysław Zięba, Grażyna Ziółkowska, Sebastian Gnat, Marta Muszyńska, Krzysztof Tomczuk, Barbara Majer Dziedzic, Łukasz Ulbrych, Aleksandra Trościańczyk

      • Listeria monocytogenes
      • Salmonella
      • Yersinia
      • Staphylococcus aureus
      • Bacterial pathogens
  24. Antibacterial activity of cinnamaldehyde and clove oil: effect on selected foodborne pathogens in model food systems and watermelon juice

    • Journal of Food Science and Technology
    • Abstract

      • Bacillus cereus
      • Yersinia
      • Staphylococcus aureus
      • Bacterial pathogens
  25. Experimental studies of microbial populations and incidence of zoonotic pathogens in the faeces of red deer (Cervus elaphus)

    • Letters in Applied Microbiology
    • Wild animals can serve as hosts, amplifiers, or reservoirs for various zoonotic diseases. Most species of deer in highly fragmented agricultural landscapes, search out maximum cover from intrusive human activity. Hence, the likelihood of zoonosis transmission is likely to increase the more humans and wildlife interact.

      • Listeria monocytogenes
      • Staphylococcus aureus
      • Yersinia
      • Bacterial pathogens