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Research Publications (Food Safety)

This page tracks research articles published in national and international peer-reviewed journals. Recent articles are available ahead of print and searchable by Journal, Article Title, and Category. Research publications are tracked across six categories: Bacterial Pathogens, Chemical Contaminants, Natural Toxins, Parasites, Produce Safety, and Viruses. Articles produced by USDA Grant Funding Agencies (requires login) and FDA Grant Funding Agencies (requires login) are also tracked in Scopus.

Displaying 126 - 150 of 1679

  1. The difference in the composition of gut microbiota is greater among bats of different phylogenies than among those with different dietary habits

    • Frontiers in Microbiology
    • Bats have a very long evolutionary history and are highly differentiated in their physiological functions. Results of recent studies suggest effects of some host factors (e.g., phylogeny and dietary habit) on their gut microbiota. In this study, we examined the gut microbial compositions of 18 different species of bats. Results showed that Firmicutes, Gammaproteobacteria, and Actinobacteria were dominant in all fecal samples of bats.

      • Bacterial pathogens
      • Vibrio
  2. Identification of the gut microbiota affecting Salmonella pullorum and their relationship with reproductive performance in hens

    • Frontiers in Microbiology
    • Introduction Pullorum disease is one of the common bacterial infectious diseases caused by Salmonella pullorum (S. pullorum), which can result in a decrease in the reproductive performance of laying hens, thus causing considerable economic losses. However, studies about the characteristics of intestinal microbiota with pullorum and their potential association with reproductive performance in hens are still limited. This study was to identify the gut microbiota associated with S.

      • Bacterial pathogens
      • Salmonella
      • Vibrio
  3. Modeling the Risk of Vibrio parahaemolyticus in Oysters in Taiwan by Considering Seasonal Variations, Time Periods, Climate Change Scenarios, and Post-Harvest Interventions

    • Microbial Risk Analysis
    • Vibrio parahaemolyticus is a halophilic gram-negative bacterium commonly found in marine environments, particularly in warm coastal waters. This pathogen has been reported as a common cause of foodborne illness associated with the consumption of raw or undercooked seafood. The presence and density of this bacterium in seafood are often associated with the climatological conditions of the marine environment.

      • Bacterial pathogens
      • Vibrio
  4. Effects of lactic acid bacteria isolated from Tibetan chickens on the growth performance and gut microbiota of broiler

    • Frontiers in Microbiology
    • Lactic acid bacteria (LAB) are organic supplements that have several advantages for the health of the host. Tibetan chickens are an ancient breed, which evolve unique gut microbiota due to their adaptation to the hypoxic environment of high altitude. However, knowledge of LAB isolated from Tibetan chickens is very limited.

      • Bacterial pathogens
      • Vibrio
  5. Improvement of growth, yield and associated bacteriome of rice by the application of probiotic Paraburkholderia and Delftia

    • Frontiers in Microbiology
    • Plant probiotic bacteria enhance growth and yield of crop plants when applied at the appropriate time and dose. Two rice probiotic bacteria, Paraburkholderia fungorum strain BRRh-4 and Delftia sp. strain BTL-M2 promote growth and yield of plants. However, no information is available on application of these two bacteria on growth, yield, and diversity and population of bacteriome in roots and rhizosphere soils of the treated rice plants.

      • Bacterial pathogens
      • Vibrio
  6. Novel next generation sequencing panel method for the multiple detection and identification of foodborne pathogens in agricultural wastewater

    • Frontiers in Microbiology
    • Detecting and identifying the origins of foodborne pathogen outbreaks is a challenging. The Next-Generation Sequencing (NGS) panel method offers a potential solution by enabling efficient screening and identification of various bacteria in one reaction.

      • Bacterial pathogens
      • Bacillus cereus
      • Staphylococcus aureus
      • Vibrio
      • Yersinia
  7. Microbiological quality, antibiotic resistant bacteria and relevant resistance genes in ready-to-eat Pacific oysters (Magallana gigas)

    • FEMS Microbiology Letters
    • Oysters are a highly valued seafood but can endanger public health, if they are eaten raw or barely cooked. We evaluated the microbiological quality of Pacific oysters (Magallana gigas) by international standard methods in four groups (each with four to five animals) acquired from supermarkets and directly from a farm producer. Most of the groups presented satisfactory microbiological quality.

      • Bacterial pathogens
      • Salmonella
      • Shigella
      • Staphylococcus aureus
      • Vibrio
  8. Clinical features and treatment outcomes of Vibrio vulnificus infection in the coastal city of Ningbo, China

    • Frontiers in Microbiology
    • Background

      Vibrio vulnificus is a gram-negative, opportunistic pathogen common to warm waters worldwide. Human V. vulnificus infection is rare and typically affects those residing in coastal areas during the summer months, but it causes rapid deterioration and is fatal.

      Methods

      • Bacterial pathogens
      • Vibrio
  9. Epidemiological characteristics of Vibrio parahaemolyticus outbreaks, Zhejiang, China, 2010–2022

    • Frontiers in Microbiology
    • Background Vibrio parahaemolyticus is one of the most common foodborne pathogens and poses a significant disease burden.

      • Bacterial pathogens
      • Vibrio
  10. Sole microbiome progression in a hatchery life cycle, from egg to juvenile

    • Frontiers in Microbiology
    • Recirculating aquaculture systems (RAS) pose unique challenges in microbial community management since they rely on a stable community with key target groups, both in the RAS environment and in the host (in this case, Solea senegalensis).

      • Bacterial pathogens
      • Vibrio
  11. The Hippo-Yki pathway downstream transcription factor Scalloped negatively regulates immune defense against Vibrio parahaemolyticus infection in shrimp

  12. The first reporting of prevalence Vibrio species and expression of HSP genes in rayed pearl oyster (Pinctada radiata) under thermal conditions

    • Fish & Shellfish Immunology
    • The main goal of the present study was to evaluate the influence of thermal exposure on Vibrio population and HSP genes expression (HSP 90, HSP70, and HSP20) in rayed pearl oyster (P. radiata). To this end, the oysters were reared for 30 days at temperatures of 22 °C (control), 25 °C, 27 °C, and 29 °C. The results showed that five dominate Vibrio strains including Vibrio hepatariusV. harveyiV.

      • Bacterial pathogens
      • Vibrio
  13. Moderate organic fertilizer substitution for partial chemical fertilizer improved soil microbial carbon source utilization and bacterial community composition in rain-fed wheat fields: current year

    • Frontiers in Microbiology
    • Organic fertilizers can partially replace chemical fertilizers to improve agricultural production and reduce negative environmental impacts.

      • Bacterial pathogens
      • Vibrio
  14. Molecular mechanisms underlying the vulnerability of Pacific abalone (Haliotis discus hannai) to Vibrio harveyi infection at higher water temperature

    • Fish & Shellfish Immunology
    • Climate change is one of the most important threats to farmed abalone worldwide. Although abalone is more susceptible to vibriosis at higher water temperatures, the molecular mode of action underlying this has not been fully elucidated. Therefore, this study aimed to address the high susceptibility of Halitotis discus hannai to V.

      • Bacterial pathogens
      • Vibrio
  15. Homologous genes shared between probiotics and pathogens affect the adhesion of probiotics and exclusion of pathogens in the gut mucus of shrimp

    • Frontiers in Microbiology
    • Clarifying mechanisms underlying the selective adhesion of probiotics and competitive exclusion of pathogens in the intestine is a central theme for shrimp health.

      • Bacterial pathogens
      • Vibrio
  16. Metagenomics analysis reveals differences in rumen microbiota in cows with low and high milk protein percentage

    • Applied Microbiology and Biotechnology
    • Variation exists in milk protein concentration of dairy cows of the same breed that are fed and managed in the same environment, and little information was available on this variation which might be attributed to differences in rumen microbial composition as well as their fermentation metabolites.

      • Bacterial pathogens
      • Vibrio
  17. Adenosine 5′-monophosphate-activated protein kinase (AMPK) negatively regulates the immunity and resistance to Vibrio alginolyticus of white shrimp, Penaeus vannamei

    • Fish & Shellfish Immunology
    • Shrimp immunology is vital in establishing prophylactic and therapeutic strategies for controlling pathological problems that threaten shrimp production. Apart from dietary treatments, the adenosine 5′-monophosphate-activated protein kinase (AMPK), an important regulatory enzyme that restores cellular energy balance during metabolic and physiological stress, is known to have therapeutic potential to improve shrimp's defense mechanism.

      • Bacterial pathogens
      • Vibrio
  18. Roles of qseC mutation in bacterial resistance against anti-lipopolysaccharide factor isoform 3 (ALFPm3)

    • PLOS ONE
    • by Iyacoob Khunsri, Pinidphon Prombutara, Htut Htut Htoo, Supitcha Wanvimonsuk, Thanadon Samernate, Chindanai Pornsing, Sirinit Tharntada, Phattarunda Jaree, Vorrapon Chaikeeratisak, Kunlaya Somboonwiwat, Poochit Nonejuie Propelled by global climate changes, the shrimp industry has been facing tremendous losses in production due to various disease outbreaks, particularly early mortality syndrome (EMS), a disease caused by Vibrio parahaemolyticus AHPND.

      • Bacterial pathogens
      • Vibrio
  19. Protective Effect of Willow (Salix babylonica L.) on Fish Resistance to Vibrio parahaemolyticus and Vibrio alginolyticus

    • Antibiotics
    • Vibrio spp. cause vibriosis in many saltwater and freshwater aquatic species, such as fish, crustaceans, and mollusks. Vibrio parahaemolyticus and Vibrio alginolyticus are among the few Vibrio species commonly found in infections in fish. This study aimed at investigating the chemical composition and evaluating the antibacterial activities of Salix babylonica L.

      • Bacterial pathogens
      • Vibrio
  20. Levels of Vibrio parahaemolyticus in Pacific Oysters (Crassostrea gigas) From Washington State Following Ambient Exposure and Chilling

    • Journal of Food Protection
    • Vibrio parahaemolyticus illnesses, often associated with the consumption of raw or undercooked oysters, are most common in summer months when higher temperatures increase V. parahaemolyticus levels in the environment. In Washington, post-harvest controls focus on the time from harvest to temperature-controlled storage to minimize V.

      • Bacterial pathogens
      • Vibrio
  21. ESBL-producing Vibrio vulnificus and V. alginolyticus harbour a plasmid encoding ISEc9 upstream of blaCTX-M-55 and qnrS2 isolated from imported seafood

    • Archives of Microbiology
    • In recent years, trade liberalisation has led to the spread of antibiotic-resistant bacteria (ARB) in food products. Because ARB has reportedly been found in imported foods, the spread of plasmid-mediated ARB through food products is a concern. Here, we report the complete genome sequences of ESBL-producing Vibrio vulnificus and V. alginolyticus strains harbouring a plasmid isolated from imported seafood. First, V. vulnificus and V.

      • Bacterial pathogens
      • Vibrio
  22. Screening of Suitable Reference Genes for Immune Gene Expression Analysis Stimulated by Vibrio anguillarum and Copper Ions in Chinese Mitten Crab (Eriocheir sinensis)

    • Genes
    • The reference gene expression is not always stable under different experimental conditions, and screening of suitable reference genes is a prerequisite in quantitative real-time polymerase chain reaction (qRT-PCR). In this study, we investigated gene selection, and the most stable reference gene for the Chinese mitten crab (Eriocheir sinensis) was screened under the stimulation of Vibrio anguillarum and copper ions, respectively.

      • Bacterial pathogens
      • Vibrio
  23. Population response of intestinal microbiota to acute Vibrio alginolyticus infection in half-smooth tongue sole (Cynoglossus semilaevis)

    • Frontiers in Microbiology
    • Introduction Vibriosis causes enormous economic losses of marine fish. The present study investigated the intestinal microbial response to acute infection of half-smooth tongue sole with different-dose Vibrio alginolyticus within 72 h by metagenomic sequencing. Methods

      • Bacterial pathogens
      • Vibrio
  24. Characterization of vB_ValM_PVA8, a broad-host-range bacteriophage infecting Vibrio alginolyticus and Vibrio parahaemolyticus

    • Frontiers in Microbiology
    • Phage therapy was taken as an alternative strategy to antibiotics in shrimp farming for the control of Vibrio species of Vibrio parahaemolyticus and Vibrio alginolyticus, which cause substantial mortality and significant economic losses. In this study, a new Vibrio phage vB_ValM_PVA8 (PVA8), which could efficiently infect pathogenic isolates of V. alginolyticus and V. parahaemolyticus, was isolated from sewage water and characterized by microbiological and in silico genomic analyses.

      • Bacterial pathogens
      • Vibrio
  25. Effect of food matrix on rapid detection of Vibrio parahaemolyticus in aquatic products based on toxR gene

    • World Journal of Microbiology and Biotechnology
    • Vibrio parahaemolyticus has become an important public threat to human health. Rapid and robust pathogen diagnostics are necessary for monitoring its outbreak and spreading. Herein, we report an assay for the detection of V. parahaemolyticus based on recombinase aided amplification (RAA) combined with lateral flow dipstick (LFD), namely RAA-LFD. The RAA-LFD took 20 min at 36~38 ℃, and showed excellent specificity. It detected as low as 6.4 fg/µL of V.

      • Bacterial pathogens
      • Vibrio